PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462858535
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB_related
Protein Properties Length: 644aa    MW: 71690.2 Da    PI: 8.2729
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462858535genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.89.1e-12184225345
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                       W ++E+ ll+++++++G g+W+ +a+++g +++  qc++++ 
        462858535 184 EWNADEEILLLEGIEMYGLGNWAEVAEHVG-TKSKPQCIEHYT 225
                      6*****************************.**********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM002911.6E-10121166IPR000433Zinc finger, ZZ-type
PfamPF005693.8E-9123164IPR000433Zinc finger, ZZ-type
PROSITE profilePS5013510.824125168IPR000433Zinc finger, ZZ-type
SuperFamilySSF578503.18E-14125188No hitNo description
CDDcd023351.59E-26125173No hitNo description
PROSITE patternPS013570127154IPR000433Zinc finger, ZZ-type
SuperFamilySSF466892.92E-12178231IPR009057Homeodomain-like
PROSITE profilePS5129322.214180232IPR017884SANT domain
SMARTSM007177.6E-11181230IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-8184227IPR009057Homeodomain-like
PfamPF002493.7E-11184225IPR001005SANT/Myb domain
CDDcd001671.89E-11184226No hitNo description
SuperFamilySSF466892.87E-21541633IPR009057Homeodomain-like
PROSITE profilePS509348.555553644IPR007526SWIRM domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 644 aa     Download sequence    Send to blast
MVVFSTTPRP QIPNPNPNPD LPKIPNPDSL SSVPITRFQS GVNSVRCDWR RRLSEPVRSL  60
GLGFRGFALG FGANAMGRSR GVPNSGDDDT GHRSKRRRVA SSGDASDSIS AACGAGEGGG  120
KKALYHCNYC NKDISGKIRI KCSKCPDFDL CVECFSVGAE VTPHRSNHPY RVMDNLSFPL  180
ICPEWNADEE ILLLEGIEMY GLGNWAEVAE HVGTKSKPQC IEHYTTAYMN SPCYPLPDMS  240
HVSGKNRKEL LAMAKVQGES KKGTSFLPGD LTPKAESPFS PSRVKVEDAL GEGPAGRSPS  300
HMAGGANKKA SNVGHTKDGA NVSKVEDGHV DRSIGVKKPR YSADEGPSLT ELSGYNAKRH  360
EFDPEYDNDA EQALAEMEFK ETDSETDREL KLRVLRIYLS RLDERKRRKE FILERNLLFP  420
NPLEKDLTNE DKEVYHRYKV FMRFLSKEEH EALVRSVIEE RKIRRRIQEL QECRSAGCRT  480
LAEAKIHIEQ KRKKEYELNA QKAKESGQLI ANNKSGQKMN RPVKIEVDGS LDPKKGGAGL  540
DSGGRDSPKT TGHTSLKAWD DWDIVGLPGA ELLSASEKLL CCQNRLLPSH YLKMQEVLMQ  600
EIFKGSILKK EDAHVLFKVD PVKVDTVYDM VTKKLGNHEE APTV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6cw2_C3e-381252405120Transcriptional adapter 2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19498KRRRV
2404409RKRRKE
Functional Description ? help Back to Top
Source Description
UniProtRequired for the function of some acidic activation domains, which activate transcription from a distant site. The exact mechanism of action is not yet known. ADA2 and GCN5 function to acetylate nucleosomes, opening up the promoter region (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462858535
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020149065.10.0transcriptional adapter ADA2
SwissprotQ75LL60.0TADA2_ORYSJ; Transcriptional adapter ADA2
TrEMBLA0A3B6KQ700.0A0A3B6KQ70_WHEAT; Transcriptional adapter
TrEMBLA0A446TF210.0A0A446TF21_TRITD; Transcriptional adapter
TrEMBLM8APJ50.0M8APJ5_TRIUA; Transcriptional adapter
STRINGTRIUR3_31603-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP77083847
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]