PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462858633
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB_related
Protein Properties Length: 569aa    MW: 63464.9 Da    PI: 7.6929
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462858633genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding383.8e-12109149344
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                       W ++E+ ll+++++++G g+W+ +a+++g +++  qc++++
        462858633 109 EWNADEEILLLEGIEMYGLGNWAEVAEHVG-TKSKAQCIEHY 149
                      6*****************************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0250244.1E-17937565IPR016827Transcriptional adaptor 2
SMARTSM002911.6E-104691IPR000433Zinc finger, ZZ-type
PfamPF005693.2E-94889IPR000433Zinc finger, ZZ-type
CDDcd023351.92E-265098No hitNo description
PROSITE profilePS5013510.8245093IPR000433Zinc finger, ZZ-type
SuperFamilySSF578502.71E-1450113No hitNo description
PROSITE patternPS0135705279IPR000433Zinc finger, ZZ-type
SuperFamilySSF466892.09E-12103156IPR009057Homeodomain-like
PROSITE profilePS5129322.528105157IPR017884SANT domain
SMARTSM007176.8E-11106155IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-8109152IPR009057Homeodomain-like
CDDcd001671.42E-11109149No hitNo description
PfamPF002496.3E-12109150IPR001005SANT/Myb domain
SuperFamilySSF466892.69E-21466558IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0009631Biological Processcold acclimation
GO:0009733Biological Processresponse to auxin
GO:0009735Biological Processresponse to cytokinin
GO:0016573Biological Processhistone acetylation
GO:0042127Biological Processregulation of cell proliferation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003713Molecular Functiontranscription coactivator activity
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 569 aa     Download sequence    Send to blast
MGRSRGVPNS GDDDTGHRSK RRRVASSGDA SDSISAACGA GEGGGKKALY HCNYCNKDIS  60
GKIRIKCSKC PDFDLCVECF SVGAEVTPHR SNHPYRVMDN LSFPLICPEW NADEEILLLE  120
GIEMYGLGNW AEVAEHVGTK SKAQCIEHYA TAYMNSPCYP LPDMSHVSGK NRKELLAMAK  180
VQGESKKGTS FLPGDLTPKA ESPFSPSRVK VEDALGEGPA GRSPSHMAGG ANKKASNVGH  240
TKDGANVSKV EDGHVDRSIG VKKPRYSADE GPSLTELSGY NAKRHEFDPE YDNDAEQALA  300
EMEFKETDSE TDRELKLRVL RIYLSRLDER KRRKEFILER NLLFPNPLEK DLTNEDKEVY  360
HRYKVFMRFL SKEEHEALVR SVIEERKIRR RIQELQECRS AGCRTLAEAK IHIEQKRKKE  420
YELNAQKAKE SGQLIPNNKS GQKMNRPMKI EVDGSLDPKK GGAGLDSGGR DSPKTTGHTS  480
LKAWDDWDIV GLPGAELLSA SEKLLCCQNR LLPSHYLKMQ EVLMQEIFKG SVLKKEDAHV  540
LFKVDPVKVD TVYDMVTKKL GSHEEAPTV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6cw2_C3e-38501655120Transcriptional adapter 2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11923KRRRV
2329334RKRRKE
Functional Description ? help Back to Top
Source Description
UniProtRequired for the function of some acidic activation domains, which activate transcription from a distant site. The exact mechanism of action is not yet known. ADA2 and GCN5 function to acetylate nucleosomes, opening up the promoter region (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462858633
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020149065.10.0transcriptional adapter ADA2
SwissprotQ75LL60.0TADA2_ORYSJ; Transcriptional adapter ADA2
TrEMBLA0A3B6KQ700.0A0A3B6KQ70_WHEAT; Transcriptional adapter
TrEMBLA0A446TF210.0A0A446TF21_TRITD; Transcriptional adapter
TrEMBLM8APJ50.0M8APJ5_TRIUA; Transcriptional adapter
STRINGTRIUR3_31603-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP77083847
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]