PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462858760

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

WOX

Protein Properties

Length: 232aa MW: 26499.5 Da PI: 6.967

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462858760	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	67.7	1.5e-21	56	116	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+++t+ ql++Le+ F + n +ps+++++e++++l +++e++V++WFqNrRa+ k+ 462858760 56 RQRWQPTPMQLQILENIFDQgNGTPSKQKIKEITAELshhgQISETNVYNWFQNRRARSKR 116 89***************99************************************97 PP
2	Wus_type_Homeobox	101.7	5.3e-33	55	118	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RW Ptp Q++iLe+++++G tP+k++i++itaeL+++G+i+++NV++WFQNr+aR+++kq 462858760 55 ARQRWQPTPMQLQILENIFDQGNGTPSKQKIKEITAELSHHGQISETNVYNWFQNRRARSKRKQ 118 789***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.4E-17	51	122	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.9	52	117	IPR001356	Homeobox domain
SMART	SM00389	2.1E-14	54	121	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.28E-18	55	119	IPR009057	Homeodomain-like
CDD	cd00086	2.49E-14	56	118	No hit	No description
Pfam	PF00046	2.5E-19	56	116	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
MEVLRKQISI YATICEQLVE MHRALTEHQD SIAGMRFSNL YCDPLIVPGG HKITARQRWQ 60 PTPMQLQILE NIFDQGNGTP SKQKIKEITA ELSHHGQISE TNVYNWFQNR RARSKRKQAA 120 SLPNNAESEA EVDEESLTDK KPKSDRILQQ SNATNVHNND RISEMHHLEH NQMGGMMYGS 180 NDNNFRPSGS SGQMSFYENI MSNPRIDHFP GKVESSRGYS HLQHGEGFDM FG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	109	117	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462858760

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001288365.1	1e-154	WUSCHEL-related homeobox 8-like
Swissprot	Q5QMM3	1e-118	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	C0P6K0	1e-153	C0P6K0_MAIZE; HB transcription factor
TrEMBL	K4JE98	1e-153	K4JE98_MAIZE; HB-type transcription factor (Fragment)
STRING	GRMZM2G038252_P02	1e-154	(Zea mays)
STRING	GRMZM2G069274_P01	1e-154	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3898	37	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	1e-54	WUSCHEL related homeobox 13

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]