PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462859112
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C2H2
Protein Properties Length: 187aa    MW: 20807.8 Da    PI: 9.5309
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462859112genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.62.7e-071738223
               EETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                C+ Cgk F+r  nL+ H+r H
  462859112 17 FCQVCGKGFKRDANLRMHMRAH 38
               6*******************99 PP
2zf-C2H213.10.0003106129123
                EEETTTT.EEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCg.ksFsrksnLkrHirtH 23 
                y+C++C+ k+Fs  s+L++H + +
  462859112 106 YVCNNCNsKHFSVLSDLRTHEKHC 129
                9*******************9876 PP
3zf-C2H2120.00065138152620
                TTEEESSHHHHHHHH CS
    zf-C2H2   6 CgksFsrksnLkrHi 20 
                Cg+sFsrk+ L+ H+
  462859112 138 CGTSFSRKDKLVGHL 152
                **************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.29E-61540No hitNo description
PROSITE profilePS5015712.4871643IPR007087Zinc finger, C2H2
SMARTSM003550.00261638IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.0E-71866IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002801838IPR007087Zinc finger, C2H2
SMARTSM0035513068101IPR015880Zinc finger, C2H2-like
SMARTSM0035521106128IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MIIELDAAEL LAMYTHFCQV CGKGFKRDAN LRMHMRAHGD EYKTSAALQA NPGPANGGSS  60
SSTNKPYYSC PEEGCRWNRK HAKFQPLKSV ICAKNHYKRS HCPKMYVCNN CNSKHFSVLS  120
DLRTHEKHCG VQRWLCSCGT SFSRKDKLVG HLALFAGDGH QPAVPLDSTN ARNAAKRWSA  180
PAQQLGI
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462859112
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0632902e-89AK063290.1 Oryza sativa Japonica Group cDNA clone:001-113-E02, full insert sequence.
GenBankAP0045872e-89AP004587.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0543D10.
GenBankAP0055442e-89AP005544.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0604E01.
GenBankAP0149642e-89AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126162e-89CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822509.15e-93LOW QUALITY PROTEIN: protein SENSITIVE TO PROTON RHIZOTOXICITY 2-like
SwissprotQ0WT244e-83STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBLJ3MVD05e-95J3MVD0_ORYBR; Uncharacterized protein
STRINGOB08G30610.19e-96(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74413251
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.12e-82C2H2 family protein