PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462859342
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family NAC
Protein Properties Length: 177aa    MW: 18819.6 Da    PI: 10.3148
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462859342genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM255.2e-082250129
        NAM  1 lppGfrFhPtdeelvveyLkkkvegkkle 29
               lppGfrFhP de+l+ +yL +k++ ++ +
  462859342 22 LPPGFRFHPMDEDLLGYYLFRKATPSTRS 50
               79*******************99877644 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.84E-72147IPR003441NAC domain
PfamPF023652.1E-52357IPR003441NAC domain
SMARTSM004142.1E-3444147IPR002119Histone H2A
SuperFamilySSF471133.0E-1964144IPR009072Histone-fold
Gene3DG3DSA:1.10.20.104.3E-3366145IPR009072Histone-fold
PRINTSPR006201.6E-246984IPR002119Histone H2A
PRINTSPR006201.6E-248497IPR002119Histone H2A
PRINTSPR006201.6E-24110122IPR002119Histone H2A
PfamPF162119.4E-17116148IPR032454Histone H2A, C-terminal domain
PRINTSPR006201.6E-24124142IPR002119Histone H2A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MERFGLGGTI GLDLGGIGGG DLPPGFRFHP MDEDLLGYYL FRKATPSTRS TSTSASHGSS  60
RLRDWHAQRV GTSAPVYLAA ILDYLAAELA GNAARDNKKN RMQIPRHVLV AIPNDEELGR  120
LLVGVTIAHG GVLPNINPVL LPKKATERAG AKSPKKVKVA TKSPQGVDSP TCRISAD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2nqb_C3e-326614938123Histone H2A
2nqb_G3e-326614938123Histone H2A
4qlc_C3e-326614938123Histone H2A
4qlc_G3e-326614938123Histone H2A
6dzt_C3e-326614939124Histone H2A
6dzt_G3e-326614939124Histone H2A
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtCore component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462859342
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023877105.13e-43histone H2A
RefseqXP_023919571.13e-43histone H2A
SwissprotQ1S0534e-42H2A3_MEDTR; Probable histone H2A.3
TrEMBLA0A2R6PPY23e-42A0A2R6PPY2_ACTCH; Histone H2A
STRINGXP_008223128.12e-42(Prunus mume)
STRINGGorai.004G004000.12e-42(Gossypium raimondii)
STRINGXP_004165280.13e-42(Cucumis sativus)
STRINGEMJ072812e-42(Prunus persica)