PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462859360

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

NAC

Protein Properties

Length: 186aa MW: 21226.1 Da PI: 9.2544

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462859360	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	80.8	2.9e-25	75	186	2	120
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrd.kkyatgkrknratksgyWkatgkdkevlskkgelv 100 + GfrFhP+d+e++++yL++kv++ ++++ +i evdi+++ePw+Lp + +a+ + + f ++ + + g+r+n ++++gyWka k++ +l 462859360 75 QLGFRFHPSDKEIITYYLTPKVHDYNFTA-VTIGEVDINTSEPWELP-CEDARGEGMIFLLSEGpQISYYGSRANHVIDDGYWKAIDKNRVLL------- 165 67**********************999.66***********.3345566666655555055557**********998865444....... PP NAM 101 glkkt.Lvfykgrapkgektd 120 g+kkt L+fy+grapkg+kt+ 462859360 166 GMKKTdLIFYNGRAPKGVKTN 186 566555***********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.93E-27	71	186	IPR003441	NAC domain
PROSITE profile	PS51005	22.279	74	186	IPR003441	NAC domain
Pfam	PF02365	1.8E-10	77	175	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 186 aa Download sequence Send to blast
MLGKLERRSS QSILERLSGQ SRLTPPEGEG TNGQLNTIWH KRIARLLKQE LDKDGRQPPA 60 AAREERGHYR PLNLQLGFRF HPSDKEIITY YLTPKVHDYN FTAVTIGEVD INTSEPWELP 120 CEDARGEGMI FLLSEGPQIS YYGSRANHVI DDGYWKAIDK NRVLLGMKKT DLIFYNGRAP 180 KGVKTN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-21	72	186	15	134	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-21	72	186	15	134	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-21	72	186	15	134	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-21	72	186	15	134	NO APICAL MERISTEM PROTEIN
3swm_A	1e-21	72	186	18	137	NAC domain-containing protein 19
3swm_B	1e-21	72	186	18	137	NAC domain-containing protein 19
3swm_C	1e-21	72	186	18	137	NAC domain-containing protein 19
3swm_D	1e-21	72	186	18	137	NAC domain-containing protein 19
3swp_A	1e-21	72	186	18	137	NAC domain-containing protein 19
3swp_B	1e-21	72	186	18	137	NAC domain-containing protein 19
3swp_C	1e-21	72	186	18	137	NAC domain-containing protein 19
3swp_D	1e-21	72	186	18	137	NAC domain-containing protein 19
4dul_A	1e-21	72	186	15	134	NAC domain-containing protein 19
4dul_B	1e-21	72	186	15	134	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to DNA in promoters of target genes on a specific bipartite motif 5'-[ACG][CA]GT[AG](5-6n)[CT]AC[AG]-3' (PubMed:23340744). Promotes lateral root development (PubMed:16359384). Triggers the expression of senescence-associated genes during age-, salt- and dark-induced senescence through a regulatory network that may involve cross-talk with salt- and H(2)O(2)-dependent signaling pathways (PubMed:9351240, PubMed:15295076, PubMed:20113437, PubMed:21303842). Regulates also genes during seed germination (PubMed:20113437). Regulates positively aging-induced cell death (PubMed:19229035). Involved in age-related resistance (ARR) against Pseudomonas syringae pv. tomato and Hyaloperonospora arabidopsidis (PubMed:19694953). Antagonizes GLK1 and GLK2 transcriptional activity, shifting the balance from chloroplast maintenance towards deterioration during leaf senescence (PubMed:23459204). Promotes the expression of senescence-associated genes, including ENDO1/BFN1, SWEET15/SAG29 and SINA1/At3g13672, during senescence onset (PubMed:23340744). {ECO:0000269\|PubMed:15295076, ECO:0000269\|PubMed:16359384, ECO:0000269\|PubMed:19229035, ECO:0000269\|PubMed:19694953, ECO:0000269\|PubMed:20113437, ECO:0000269\|PubMed:21303842, ECO:0000269\|PubMed:23340744, ECO:0000269\|PubMed:23459204, ECO:0000269\|PubMed:9351240}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462859360

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: High levels during senescence (e.g. age-, salt- and dark-related) (PubMed:19229035, PubMed:20113437, PubMed:21511905, PubMed:22930749). By salt stress in an ethylene- and auxin-dependent manner (PubMed:16359384, PubMed:19608714, PubMed:20113437, PubMed:20404534). Induced by H(2)O(2) (PubMed:20404534). Accumulates in response to abscisic acid (ABA), ethylene (ACC) and auxin (NAA) (PubMed:16359384, PubMed:19608714). Repressed by high auxin (IAA) levels (PubMed:21511905). Age-related resistance (ARR)-associated accumulation (PubMed:19694953). Repressed by miR164 (PubMed:19229035). {ECO:0000269\|PubMed:16359384, ECO:0000269\|PubMed:19229035, ECO:0000269\|PubMed:19608714, ECO:0000269\|PubMed:19694953, ECO:0000269\|PubMed:20113437, ECO:0000269\|PubMed:20404534, ECO:0000269\|PubMed:21511905, ECO:0000269\|PubMed:22930749}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP008982	2e-49	AP008982.1 Triticum aestivum mitochondrial DNA, complete genome.
GenBank	EU534409	2e-49	EU534409.1 Triticum aestivum cultivar Chinese Yumai mitochondrion, complete genome.
GenBank	GU985444	2e-49	GU985444.1 Triticum aestivum mitochondrion, complete genome.
GenBank	HG670306	2e-49	HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
GenBank	KJ078649	2e-49	KJ078649.1 UNVERIFIED: Triticum durum cell-line 56-1 mitochondrion sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020576379.1	5e-32	NAC domain-containing protein 92-like
Swissprot	Q9FKA0	1e-29	NAC92_ARATH; NAC domain-containing protein 92
TrEMBL	D6MK06	3e-31	D6MK06_9ASPA; Transcription factor (Fragment)
STRING	Lus10026879	8e-33	(Linum usitatissimum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39610.1	4e-32	NAC domain containing protein 6

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Manacorda CA, et al. Salicylic acid determines differential senescence produced by two Turnip mosaic virus strains involving reactive oxygen species and early transcriptomic changes. Mol. Plant Microbe Interact., 2013. 26(12): p. 1486-98 [PMID:23945002] Khan M,Rozhon W,Poppenberger B The role of hormones in the aging of plants - a mini-review. Gerontology, 2014. 60(1): p. 49-55 [PMID:24135638] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Bohner A,Kojima S,Hajirezaei M,Melzer M,von Wirén N Urea retranslocation from senescing Arabidopsis leaves is promoted by DUR3-mediated urea retrieval from leaf apoplast. Plant J., 2015. 81(3): p. 377-87 [PMID:25440717] Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways. Plant J., 2017. 92(6): p. 1106-1120 [PMID:29032592] Kim H, et al. Circadian control of ORE1 by PRR9 positively regulates leaf senescence in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2018. 115(33): p. 8448-8453 [PMID:30065116]