PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462859754
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family HSF
Protein Properties Length: 110aa    MW: 12164.8 Da    PI: 9.2571
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462859754genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind92.54.9e-2913110297
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTX..TTSEEEEESXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksksk..ekiweFkhksFkkgkkellek 96 
                   F+ k+y ++ed+ ++ +i w + +nsf+v d+  f++++Lp +Fkh+nf+SFvRQLn+Y  ++++ +  +  +k  ++ weF+h sF +g+++ll++
     462859754  13 FVWKTYMMVEDPGTDGVIGWGRGNNSFIVADPFVFSQTLLPAHFKHNNFSSFVRQLNTYVSSSIHPSFCTGFRKvdPDRWEFAHASFLRGQTHLLRN 109
                   9*****************************************************************99987775569******************99 PP

                   X CS
  HSF_DNA-bind  97 i 97 
                   i
     462859754 110 I 110
                   7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004155.9E-399110IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.9E-3410110IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.2E-3010110IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.1E-2513110IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-131336IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-135163IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-136476IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 110 aa     Download sequence    Send to blast
MAAGGAGGAA APFVWKTYMM VEDPGTDGVI GWGRGNNSFI VADPFVFSQT LLPAHFKHNN  60
FSSFVRQLNT YVSSSIHPSF CTGFRKVDPD RWEFAHASFL RGQTHLLRNI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B9e-23111016126Heat shock factor protein 1
5d5v_B9e-23111016126Heat shock factor protein 1
5d5v_D9e-23111016126Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462859754
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5409756e-76JX540975.1 Paspalum vaginatum clone StvSingle_HKZDOCN01AUS53 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004965592.15e-61heat stress transcription factor C-2b
SwissprotQ0DBL62e-56HFC2B_ORYSJ; Heat stress transcription factor C-2b
TrEMBLA0A368QVH61e-59A0A368QVH6_SETIT; Uncharacterized protein
STRINGPavir.J17014.1.p8e-57(Panicum virgatum)
STRINGPavir.J36148.1.p1e-56(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44713470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.19e-41heat shock transcription factor C1