PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462859892
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family NAC
Protein Properties Length: 106aa    MW: 11361.7 Da    PI: 4.6932
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462859892genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM32.52.5e-1046102148
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkk........leleev.ikev.diykvePwdLp 48 
                lp+G++F+Ptd+el+ e+L++kv+ ++        ++++   i+   +i++++P++Lp
  462859892  46 LPAGVKFDPTDQELI-EHLEAKVRPSTaaapshplIDEFIPtIEGEdGICYTHPEKLP 102
                799************.99******999777775553333333776646*********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-1038104IPR003441NAC domain
PROSITE profilePS5100511.74646106IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 106 aa     Download sequence    Send to blast
MDGGAATGSG GGLGDSTQEH QKYMSESSRC PRCGHKISRL LDWVGLPAGV KFDPTDQELI  60
EHLEAKVRPS TAAAPSHPLI DEFIPTIEGE DGICYTHPEK LPGEFS
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462859892
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004966092.17e-48uncharacterized protein LOC101753253
SwissprotQ9M0F82e-34NAC75_ARATH; NAC domain-containing protein 75
TrEMBLA0A3L6DFR44e-48A0A3L6DFR4_MAIZE; NAC domain-containing protein 73
TrEMBLC7J3W65e-49C7J3W6_ORYSJ; Os06g0560300 protein
STRINGBRADI1G37900.11e-48(Brachypodium distachyon)
STRINGMLOC_72553.15e-48(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145338117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.13e-36NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]