PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462860332
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family G2-like
Protein Properties Length: 420aa    MW: 45803.8 Da    PI: 8.1706
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462860332genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like103.99.8e-33241295155
    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                k+r+rWt++LHerFv++v+qLGG++kAtPk il+lm+ +gLt++h+kSHLQkYR+
  462860332 241 KTRIRWTQDLHERFVDCVNQLGGADKATPKGILKLMNSDGLTIYHIKSHLQKYRI 295
                68****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.662238298IPR017930Myb domain
SuperFamilySSF466898.6E-18239295IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.1E-30240296IPR009057Homeodomain-like
TIGRFAMsTIGR015574.6E-24241296IPR006447Myb domain, plants
PfamPF002497.7E-9245294IPR001005SANT/Myb domain
PfamPF143791.7E-21325371IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MNAKKIKLHD HHYGSPLCDP QLFTGTAAGL SFHPGLVSSA PQQHNGAGNW LQEEYTPTPR  60
SVLGTQGGGG CVGYDTAAFF AAEHLLGMTR LDCALGASTF PAMAALKTPF GRSPETDHQL  120
SMLLGDNSVR TYFVPPQQRN AAEVPPALKL PLQQQQQQQQ EEEERVHGMF GNASTARLLG  180
GEPKTHSFTP HVSASTLLPA MEASSMQSPM ENPLSRSCSM GAPTIHTGNV VTAPGQGAPS  240
KTRIRWTQDL HERFVDCVNQ LGGADKATPK GILKLMNSDG LTIYHIKSHL QKYRIAKYIP  300
ASSEGKQEKR AAGNDVQNLD PNTGVQITEA LRVQLDVQRR LHEQLEIQRN LQLKIEEQGK  360
RLQKMFEEQL KASKSVLEPR EKLQSAGAAG AFASVSEQDE DAFTMPWPAA ASTMRCSRPR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A4e-22241298158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-22241298158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-22241298158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-22241298158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462860332
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822779.10.0probable transcription factor KAN2
RefseqXP_025822780.10.0probable transcription factor KAN2
TrEMBLA0A2S3IBB00.0A0A2S3IBB0_9POAL; Uncharacterized protein
STRINGSi022099m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69333751
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.13e-68G2-like family protein