PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462860887
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family NAC
Protein Properties Length: 210aa    MW: 22550.9 Da    PI: 11.594
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462860887genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM100.22.8e-31181601128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.....tksgyWkatgkdkevls 94 
                lppGfrF+Ptdeelv +yL++k+ g +l++  vi+ v ++y+++Pwd+p    a+e e yfF+ r  ++ t     ra     t+sg+Wk  gk+++v+ 
  462860887  18 LPPGFRFRPTDEELVLQYLRRKAFGVPLPA-AVIPVVaNLYSLDPWDIP---GASEGEKYFFAVRPASSGTAGVCARAksggaTASGRWKPAGKERPVVL 113
                79****************************.7888888***********...3456799*******9999877555554555599**************9 PP

        NAM  95 k....kgelvglkktLvfy.........kgrapkgektdWvmheyrl 128
                +    ++ lvg+k+tL+f          +++a  g+ + Wvmheyrl
  462860887 114 SrpcgGSFLVGVKRTLAFAprrgekkssRASAGAGRTAGWVMHEYRL 160
                888877778**********9988776555677778899*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.24E-3912186IPR003441NAC domain
PROSITE profilePS5100541.90418186IPR003441NAC domain
PfamPF023654.2E-2019160IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MAKSAPVLVR HAGGVSALPP GFRFRPTDEE LVLQYLRRKA FGVPLPAAVI PVVANLYSLD  60
PWDIPGASEG EKYFFAVRPA SSGTAGVCAR AKSGGATASG RWKPAGKERP VVLSRPCGGS  120
FLVGVKRTLA FAPRRGEKKS SRASAGAGRT AGWVMHEYRL AAPLHKNGCS LADAEGEWVA  180
CRVFRKSRQQ QQQPRRRAGD GTAPRRNNFV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-261719216171NO APICAL MERISTEM PROTEIN
1ut4_B6e-261719216171NO APICAL MERISTEM PROTEIN
1ut7_A6e-261719216171NO APICAL MERISTEM PROTEIN
1ut7_B6e-261719216171NO APICAL MERISTEM PROTEIN
3swm_A7e-261719219174NAC domain-containing protein 19
3swm_B7e-261719219174NAC domain-containing protein 19
3swm_C7e-261719219174NAC domain-containing protein 19
3swm_D7e-261719219174NAC domain-containing protein 19
3swp_A7e-261719219174NAC domain-containing protein 19
3swp_B7e-261719219174NAC domain-containing protein 19
3swp_C7e-261719219174NAC domain-containing protein 19
3swp_D7e-261719219174NAC domain-containing protein 19
4dul_A6e-261719216171NAC domain-containing protein 19
4dul_B6e-261719216171NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462860887
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0865717e-40BT086571.1 Zea mays full-length cDNA clone ZM_BFc0184N14 mRNA, complete cds.
GenBankDQ2454917e-40DQ245491.1 Zea mays clone 16115 mRNA sequence.
GenBankDQ2460957e-40DQ246095.1 Zea mays clone 16151 mRNA sequence.
GenBankEU9709067e-40EU970906.1 Zea mays clone 353721 NAC domain-containing protein 68 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820407.13e-89NAC domain-containing protein 18-like isoform X2
TrEMBLA0A2S3I4F77e-88A0A2S3I4F7_9POAL; Uncharacterized protein
STRINGSi014408m2e-88(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118183140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.12e-28NAC domain containing protein 83