PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462861451
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family WRKY
Protein Properties Length: 308aa    MW: 32971.2 Da    PI: 8.3195
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462861451genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY90.11.8e-28145204159
                ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                ++Dgy+WrKYGqK+ ++++ pr+Y+rC++a +Cpvkkkv++sae+ +v++ tYegeHnh+
  462861451 145 VKDGYQWRKYGQKVTRDNPSPRAYFRCAYApSCPVKKKVQKSAEESSVLVATYEGEHNHP 204
                58***************************99****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182901.44E-24141206IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.4E-27142206IPR003657WRKY domain
SMARTSM007747.1E-33145205IPR003657WRKY domain
PfamPF031065.1E-24146204IPR003657WRKY domain
PROSITE profilePS5081125.901147206IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002237Biological Processresponse to molecule of bacterial origin
GO:0009611Biological Processresponse to wounding
GO:0009751Biological Processresponse to salicylic acid
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050691Biological Processregulation of defense response to virus by host
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MMLTDSARHA GFSPVCLDLS VGLPTPRRDA EMEADAEHDR KAGGRATSSM SDEEAKTLEA  60
KLTQVSEENR RLSEMIAHLY AAQIARPDSP AAAGRKRERD SPELSNSSDR AVSPPLALSD  120
GASCKRIKVS RVCTRIDPAD TTLTVKDGYQ WRKYGQKVTR DNPSPRAYFR CAYAPSCPVK  180
KKVQKSAEES SVLVATYEGE HNHPCPTRAG GLPCIPTRSG SVPCSISINS SSSGPTITLD  240
LTKHGGAGGG GVRVLGADQA PDLKKLCREV ASPEFRTALV EQMASVLTSN TDFTGALAAA  300
ILRQLPEY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A7e-191452061474WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Regulates, probably indirectly, the activation of defense-related genes during defense response (By similarity). Modulates plant innate immunity against X.oryzae pv. oryzae (Xoo) (By similarity). {ECO:0000250|UniProtKB:Q6EPZ2, ECO:0000250|UniProtKB:Q6QHD1}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00251DAPTransfer from AT1G80840Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap462861451
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by biotic elicitors (e.g. fungal chitin oligosaccharide) (By similarity). Induced by pathogen infection (e.g. M.grisea and X.oryzae pv. oryzae (Xoo)) (PubMed:16528562). Accumulates after treatment with benzothiadiazole (BTH) and salicylic acid (SA) (By similarity). {ECO:0000250|UniProtKB:Q6EPZ2, ECO:0000269|PubMed:16528562}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0353045e-85BT035304.1 Zea mays full-length cDNA clone ZM_BFb0054B07 mRNA, complete cds.
GenBankBT0684935e-85BT068493.1 Zea mays full-length cDNA clone ZM_BFb0234B18 mRNA, complete cds.
GenBankEU5187725e-85EU518772.1 Zea mays WRKY DNA-binding protein (WRKY) mRNA, complete cds.
GenBankKJ7268105e-85KJ726810.1 Zea mays clone pUT3166 WRKY transcription factor (WRKY53) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002462384.11e-142WRKY transcription factor WRKY76
SwissprotQ6IEK51e-120WRK76_ORYSI; WRKY transcription factor WRKY76
TrEMBLA0A0A9SU371e-152A0A0A9SU37_ARUDO; WRKY
STRINGSb02g024760.11e-141(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP66603552
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31800.12e-49WRKY DNA-binding protein 18