PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462861833
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family NF-YB
Protein Properties Length: 167aa    MW: 18639.7 Da    PI: 7.4433
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462861833genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB144.42.6e-4540132294
      NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 
                ++qd++lPianv+rimk vlP +akisk aket+qec++ef++fvt+eas++c+re+rktingdd+++a+ +lG+e+y ++++ yl++yre e
  462861833  40 SAQDNLLPIANVGRIMKDVLPPQAKISKRAKETIQECATEFVGFVTGEASERCRRERRKTINGDDICHAMRSLGLEHYSDAMRRYLQRYRESE 132
                579****************************************************************************************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.108.0E-4240136IPR009072Histone-fold
SuperFamilySSF471133.22E-3342136IPR009072Histone-fold
PfamPF008081.1E-2346109IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.2E-147391No hitNo description
PRINTSPR006151.2E-1492110No hitNo description
PRINTSPR006151.2E-14111129No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MSENFNFTSL GQSGSSQLQT LVRASSSAST DHADGGGVNS AQDNLLPIAN VGRIMKDVLP  60
PQAKISKRAK ETIQECATEF VGFVTGEASE RCRRERRKTI NGDDICHAMR SLGLEHYSDA  120
MRRYLQRYRE SEELAAALNS SSGREIQIDV RDELSIFRGN EQRRDRN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B9e-3842130492Transcription factor HapC (Eurofung)
4g92_B9e-3842130492Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462861833
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0032461e-102AP003246.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0423A12.
GenBankAP0032661e-102AP003266.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0492G09.
GenBankAP0149571e-102AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126091e-102CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814482.18e-85transcriptional activator hap3-like
SwissprotO040271e-41NFYB4_ARATH; Nuclear transcription factor Y subunit B-4
TrEMBLA0A2T7DBX61e-86A0A2T7DBX6_9POAL; Uncharacterized protein
STRINGPavir.Ea03969.1.p4e-81(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29173887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.11e-42nuclear factor Y, subunit B5
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]