PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462861845

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

HB-other

Protein Properties

Length: 1207aa MW: 132313 Da PI: 8.6827

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462861845	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	19.1	2.3e-06	126	182	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +++R ++++ ++ +++ F+ + ++ ++e +e++ +g+t +qV+ +F R +++k 462861845 126 KKPRDLLNPKAVKYMQSIFALKDTIGKKETREISVLCGVTVTQVREFFASERSRMRK 182 799****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	8.908	123	183	IPR001356	Homeobox domain
SMART	SM00389	0.0011	125	187	IPR001356	Homeobox domain
SuperFamily	SSF46689	5.13E-6	125	185	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.9E-5	126	186	IPR009057	Homeodomain-like
CDD	cd00086	6.77E-4	126	182	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009911	Biological Process	positive regulation of flower development
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1207 aa Download sequence Send to blast
ENPAHRNTVP SHLVRVPISF LLLAPHLQTL TPPRRRPPPR HHTAQQKGQP DAQPPVGPME 60 LVAFKPAAGG GADAGSIPAM VAAQQEMLHT QVDQLQSLVI TQCRLTGVNP LAQEMAAGAL 120 SIKIGKKPRD LLNPKAVKYM QSIFALKDTI GKKETREISV LCGVTVTQVR EFFASERSRM 180 RKVVNLSREK ALKIEAPKEH HDSCSITTEQ TPLDIEARAE IIEPLRTLGP VEVPRSSSQP 240 TDVPQFYLQP VLVPQSSLQP TDALQNSLQQ AEVQQNHADP IIPSGTIPVQ PTDAKINPDS 300 VRKESKEDEV PGVESEDKKF FDSIFALTQK EETFSGQVKL MDWILQINNI TILSWFVTMG 360 GLTIVSAWLS QAAVEEQTSV ILVIFKVLLH LPLHKALPAH MSTVLQTINR LRFYRTQDIS 420 SKAKIILARL SKVLVRSKAL KMPQKDLTEK QRISEILRDE SWKSEVGITE EILALTDGAN 480 ENRKPEPRKT PMLLTASADE PSKKSAPQTK SKQKRKVLLV EHPNKKAAGK NAHSVRSIST 540 NNSRPLSADD IQKAKMRAMF MQEKYGKVDT GKASDKLQAM ETQKSSGFHN SIVPPLPKSP 600 VTSTTKEPVD LSPQTSKQST VPQTDKAEPA DGLKLKMSSP KHVIEKLDSK RVLWQIPPAV 660 WIDPSWSVGA GENSKELEVQ TQRNRREKET FYANQRDIPL NPKDPWDLEM DFDDSLTPEI 720 PIEQQPDADN METDTVGTAP PAIVDPVDDK QIESTSSTSV ADASCANDAD KPDFELLAVL 780 LKNPQLVFAL TSNKGENVPS EQTIALLDTL KRTGLELSDL VNNLANGAAA APKEPPQPEP 840 VPTSLPSPTP ASDHTAMAGW GPEHPTQARA PSVQHPQSSN RGNTPPIGNT VQQSFSNVVS 900 SLPSQPYASV SVLPAQNQVN VPSLPQLAAS VNPPIQHVSP VNNHPNRASV HQHAQQYALV 960 SDPVAVSFHQ QPAVNKVTHG LENISNPAVA HASMSESNAS HTTFPWQSNV APVTSTGRGT 1020 SPDPWAVRTS NSYNIASTNT VPYANQNFYG NHSAQNGLGA YGSVSVSSHA VLPAHAPDRN 1080 GYSHSAEYQT LARDSHRRHS KSPELVGSGH DYGGTQGYNA RTWNGAGQQS YNPEPSRQLI 1140 SARQSYTSAE PSRQQWSSGH QSYSFEPSRP WSSSQQGQNP ETSRPWNLGN QDQYNPNGRR 1200 SYDRWRR

Sequence ? help Back to Top

Protein Sequence Length: 1207 aa Download sequence Send to blast

ENPAHRNTVP SHLVRVPISF LLLAPHLQTL TPPRRRPPPR HHTAQQKGQP DAQPPVGPME  60
LVAFKPAAGG GADAGSIPAM VAAQQEMLHT QVDQLQSLVI TQCRLTGVNP LAQEMAAGAL  120
SIKIGKKPRD LLNPKAVKYM QSIFALKDTI GKKETREISV LCGVTVTQVR EFFASERSRM  180
RKVVNLSREK ALKIEAPKEH HDSCSITTEQ TPLDIEARAE IIEPLRTLGP VEVPRSSSQP  240
TDVPQFYLQP VLVPQSSLQP TDALQNSLQQ AEVQQNHADP IIPSGTIPVQ PTDAKINPDS  300
VRKESKEDEV PGVESEDKKF FDSIFALTQK EETFSGQVKL MDWILQINNI TILSWFVTMG  360
GLTIVSAWLS QAAVEEQTSV ILVIFKVLLH LPLHKALPAH MSTVLQTINR LRFYRTQDIS  420
SKAKIILARL SKVLVRSKAL KMPQKDLTEK QRISEILRDE SWKSEVGITE EILALTDGAN  480
ENRKPEPRKT PMLLTASADE PSKKSAPQTK SKQKRKVLLV EHPNKKAAGK NAHSVRSIST  540
NNSRPLSADD IQKAKMRAMF MQEKYGKVDT GKASDKLQAM ETQKSSGFHN SIVPPLPKSP  600
VTSTTKEPVD LSPQTSKQST VPQTDKAEPA DGLKLKMSSP KHVIEKLDSK RVLWQIPPAV  660
WIDPSWSVGA GENSKELEVQ TQRNRREKET FYANQRDIPL NPKDPWDLEM DFDDSLTPEI  720
PIEQQPDADN METDTVGTAP PAIVDPVDDK QIESTSSTSV ADASCANDAD KPDFELLAVL  780
LKNPQLVFAL TSNKGENVPS EQTIALLDTL KRTGLELSDL VNNLANGAAA APKEPPQPEP  840
VPTSLPSPTP ASDHTAMAGW GPEHPTQARA PSVQHPQSSN RGNTPPIGNT VQQSFSNVVS  900
SLPSQPYASV SVLPAQNQVN VPSLPQLAAS VNPPIQHVSP VNNHPNRASV HQHAQQYALV  960
SDPVAVSFHQ QPAVNKVTHG LENISNPAVA HASMSESNAS HTTFPWQSNV APVTSTGRGT  1020
SPDPWAVRTS NSYNIASTNT VPYANQNFYG NHSAQNGLGA YGSVSVSSHA VLPAHAPDRN  1080
GYSHSAEYQT LARDSHRRHS KSPELVGSGH DYGGTQGYNA RTWNGAGQQS YNPEPSRQLI  1140
SARQSYTSAE PSRQQWSSGH QSYSFEPSRP WSSSQQGQNP ETSRPWNLGN QDQYNPNGRR  1200
SYDRWRR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	807	812	DTLKRT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462861845

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025815839.1	0.0	homeobox protein LUMINIDEPENDENS isoform X1
TrEMBL	A0A2S3HNA2	0.0	A0A2S3HNA2_9POAL; Uncharacterized protein
STRING	Pavir.Ea03823.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8043	30	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	1e-100	HB-other family protein