PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462861884
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bHLH
Protein Properties Length: 338aa    MW: 35980.2 Da    PI: 6.3065
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462861884genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.38.4e-062302671254
                HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  462861884 230 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 267
                677888999*******998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.731218267IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-11228282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.38E-6228272No hitNo description
SMARTSM003530.0061229273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.6E-9232275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042631Biological Processcellular response to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071472Biological Processcellular response to salt stress
GO:2000214Biological Processregulation of proline metabolic process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
GVWTSPTAAT ESTSSISFQD PYRSATHQPA SDAASSLGDP HMDWTQAFLS GTSDASFQAV  60
LQDDVARAHP TADDAAMNNP LIRGMNDGFL LDQASLAPSQ ALFDATAAAH NISMYGDNQP  120
SAGYDATAAT QLSHLLKSSV PASSPMQGGG GGQMQQYLSG GYLPFGGPLP SQLLLQALQP  180
KLGSRVSNAN TLMAKDPCSP ATRKSVSESP APAKRPRIEA PSPLPTFKVR KEKLGDRITA  240
LQQLVSPFGK TDTASVLHEA IEYIKFLHDQ VASLSSPYLK NGIPFQQFQQ KGAEDAKDDT  300
KQDLRSRGLC LVPVANTYTV ASETVPEFWH PTFGGTFR
Cis-element ? help Back to Top
SourceLink
PlantRegMap462861884
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9698011e-135EU969801.1 Zea mays clone 335797 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004970206.11e-180transcription factor bHLH112
TrEMBLK3XIS31e-180K3XIS3_SETIT; Uncharacterized protein
STRINGSi001796m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29703464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.38e-49bHLH family protein