PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462862046

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

NAC

Protein Properties

Length: 213aa MW: 24030.5 Da PI: 9.4905

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462862046	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	173.4	6.7e-54	20	149	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel. 99 lppGfrFhP+dee++++yL++kv + ++++ +i e+di+k+ePw+Lp k+k +ekewyf++++d+ky+tg r+nrat+sgyWkatgkd+++++ +++ 462862046 20 LPPGFRFHPSDEEIITYYLTNKVCDGNFTA-ITIGEADINKSEPWELPFKAKMGEKEWYFYCRKDRKYPTGLRANRATESGYWKATGKDRKIYHGASSVp 118 79***********************999.78***********99999*************************************744446 PP NAM 100 ..vglkktLvfykgrapkgektdWvmheyrl 128 g+kktLvfy grap+g+kt+Wvmheyrl 462862046 119 vlLGMKKTLVFYMGRAPSGVKTNWVMHEYRL 149 779************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.32E-59	14	185	IPR003441	NAC domain
PROSITE profile	PS51005	54.525	20	186	IPR003441	NAC domain
Pfam	PF02365	3.3E-28	21	149	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence Send to blast
MEDQHQLHQR RSGGAGGLVL PPGFRFHPSD EEIITYYLTN KVCDGNFTAI TIGEADINKS 60 EPWELPFKAK MGEKEWYFYC RKDRKYPTGL RANRATESGY WKATGKDRKI YHGASSVPVL 120 LGMKKTLVFY MGRAPSGVKT NWVMHEYRLD GKGGVPCPAA SSNTSPRNLV LHINKEEWVV 180 CRVCDKSLGI RKEPELAPVS APPHRMASMS DRE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	3e-48	18	192	18	174	NAC domain-containing protein 19
3swm_B	3e-48	18	192	18	174	NAC domain-containing protein 19
3swm_C	3e-48	18	192	18	174	NAC domain-containing protein 19
3swm_D	3e-48	18	192	18	174	NAC domain-containing protein 19
3swp_A	3e-48	18	192	18	174	NAC domain-containing protein 19
3swp_B	3e-48	18	192	18	174	NAC domain-containing protein 19
3swp_C	3e-48	18	192	18	174	NAC domain-containing protein 19
3swp_D	3e-48	18	192	18	174	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462862046

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025801540.1	1e-83	NAC domain-containing protein 79-like
Swissprot	Q9FLJ2	4e-75	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A1E5V4C4	1e-83	A0A1E5V4C4_9POAL; NAC domain-containing protein 79
STRING	Pavir.Bb02033.1.p	1e-81	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1452	37	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	2e-77	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]