PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462862240
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bHLH
Protein Properties Length: 234aa    MW: 25470.3 Da    PI: 5.2441
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462862240genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.51.7e-0675120655
                HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                ++  + RR+ri +++  L+ l+P +    +k   Ka +L + ++Y++sLq
  462862240  75 SAQSKVRRERISERMRVLQALVPGC----DKVTGKALVLDEIINYVQSLQ 120
                667799******************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.81769119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-1371136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-575125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.70E-879124No hitNo description
Gene3DG3DSA:4.10.280.104.6E-1282133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MATSSRIQQQ MEHGLTNASY TMSSYLFCHG AGTDSAIPED ASLEASSAVL DTSPQGTASV  60
DKKTKPRDDS CSLNSAQSKV RRERISERMR VLQALVPGCD KVTGKALVLD EIINYVQSLQ  120
NQVEFLSMRI ASLSPVLYGF GMDSDAFNDH TQKIEGMLHH EALAMPGSVL NRAPSHAIMD  180
TNTSTSSASY EVHGDGGISF HQDNGSYMVQ TVGDEPRQEL FNQVVFSNHM GSFQ
Cis-element ? help Back to Top
SourceLink
PlantRegMap462862240
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0855811e-112BT085581.1 Zea mays full-length cDNA clone ZM_BFc0036H10 mRNA, complete cds.
GenBankEU9621211e-112EU962121.1 Zea mays clone 240361 bHLH transcription factor GBOF-1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025803717.11e-124transcription factor bHLH137-like
TrEMBLA0A2S3H1M21e-123A0A2S3H1M2_9POAL; Uncharacterized protein
TrEMBLA0A2T7EUH41e-123A0A2T7EUH4_9POAL; Uncharacterized protein
STRINGPavir.J05063.1.p1e-122(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23583791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.24e-33bHLH family protein