PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462862564

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

Dof

Protein Properties

Length: 268aa MW: 28946.3 Da PI: 7.3911

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462862564	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	116.2	1.4e-36	42	102	3	63
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 e+a kcprC+s+ntkfCyynnyslsq r+fCkaC ryWt+GG+lrnvPvGgg+rk+k+sss 462862564 42 EEAFKCPRCESSNTKFCYYNNYSLSQSRFFCKACCRYWTEGGTLRNVPVGGGCRKHKRSSS 102 6889*****************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-24	39	99	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.0E-30	43	99	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.13	45	99	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	47	83	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence Send to blast
MDKDVMGNAA PVEEARKAQQ QQQWEQDVEG NGGEHKRRPQ LEEAFKCPRC ESSNTKFCYY 60 NNYSLSQSRF FCKACCRYWT EGGTLRNVPV GGGCRKHKRS SSSSTAMPPS SSSIAEVISS 120 QQSRYLGPAF STGFPNVLPT FTSSGGFKIP NFSMPLVPPL SLSSRAPTPA PVMAPVAATP 180 TKSSFLDMLR SGLLDNQGND LYGPMITDNI NEMDVLLPMS SNFGIMQQHE LVGDNHNVNV 240 TEGGGQWPAS QHRPNNGGSS AAGSEGGQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462862564

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	Pavir.J13869.1.p	1e-50	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	2e-31	Dof family protein