PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462863009

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

LBD

Protein Properties

Length: 148aa MW: 16489.1 Da PI: 4.0042

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462863009	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	37.3	7.5e-12	2	40	62	100
DUF260 62 vyeAearardPvyGavgvilklqqqleqlkaelallkee 100 yeA+ar++dP+yG+v++i++lqqq+ l+a+l++lk++ 462863009 2 SYEAQARLQDPIYGCVAHIFSLQQQVVLLQAQLESLKAQ 40 7*********************************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03195	2.7E-9	1	38	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 148 aa Download sequence Send to blast
MSYEAQARLQ DPIYGCVAHI FSLQQQVVLL QAQLESLKAQ TTQGYGDGSL TSIPQNGNCE 60 RLTPSMQDGQ FFVHPTMPSD NSLVKEEIQL YFAKDCFTSE STQYSDGYEQ DLCMPDYSSS 120 NPSCTAQRSG YHDIDDLQSV AFAYLNQA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462863009

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JN672670	1e-173	JN672670.1 Eragrostis tef bio-material GRIN PI524434 clone Tefdw3b, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004974249.1	1e-74	LOB domain-containing protein 29
TrEMBL	J9QGM7	1e-86	J9QGM7_ERATE; Uncharacterized protein
STRING	Pavir.Fa00011.1.p	1e-74	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2501	38	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58190.1	4e-08	lateral organ boundaries-domain 29