PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462863174

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

bHLH

Protein Properties

Length: 133aa MW: 13591.4 Da PI: 7.8851

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462863174	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.6	1.3e-09	95	122	2	29
HHHHHHHHHHHHHHHHHHHHHHHCTSCC CS HLH 2 rrahnerErrRRdriNsafeeLrellPk 29 +++h ++Er+RR+++N+ ++ Lr+l+P 462863174 95 KMSHIAVERNRRKQMNEHLAVLRSLMPC 122 789************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	7.61E-8	91	127	No hit	No description
SuperFamily	SSF47459	4.36E-9	92	128	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	10.944	93	133	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-8	94	125	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.4E-7	95	124	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 133 aa Download sequence Send to blast
MGDGGLCELR HVSDAEDLFS ILETCWEGCM NGAPAGGGGG ATAAAAAFRQ NCTGGGGSVA 60 GGAAKGGGGG PVHKKQKSSS APAIYSVDDV DGEAKMSHIA VERNRRKQMN EHLAVLRSLM 120 PCFYVKRPAE AIK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462863174

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025799200.1	4e-36	transcription factor SPEECHLESS-like
TrEMBL	A0A3L6QHE7	7e-35	A0A3L6QHE7_PANMI; Transcription factor SPEECHLESS-like
STRING	Si017482m	2e-33	(Setaria italica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53210.1	1e-18	bHLH family protein