PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462863518
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bHLH
Protein Properties Length: 284aa    MW: 30178.6 Da    PI: 8.849
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462863518genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.52.3e-082062441255
                HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                RR+ri +++  L+el+P+      +K++ +++LekA+ Y+k Lq
  462863518 206 RRERIAEKLKILQELVPNG-----TKVDLVTMLEKAITYVKFLQ 244
                9****************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.42194243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.7E-6200249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.21E-9206248No hitNo description
PfamPF000101.6E-5206244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-10206255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.6E-10206252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
RASEPLQRRG RPGXXXXXXX XXXXXXXXXX XXXXXXXPGL RPAFDDNFKT GGCGHADYYS  60
WAGYGGGGGS GASSSSSSSV LSFEQAGSGG RHLAYSTTGG DDDCAMWMDA GARLXXXXXX  120
CCRSRNSGAG QRPAAGQGSA EACTSVGNMM ILLCVKQQCG EVQAAPVGKK QCASGGGGGG  180
GTLKASPRRC NSNSCYLFFL RIIPVRRERI AEKLKILQEL VPNGTKVDLV TMLEKAITYV  240
KFLQLQVKVL AADEFWPAQG GKAPELSQVK DALDAILSSQ HSNQ
Cis-element ? help Back to Top
SourceLink
PlantRegMap462863518
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1085872e-53AK108587.1 Oryza sativa Japonica Group cDNA clone:002-146-B03, full insert sequence.
GenBankHQ8588582e-53HQ858858.1 Oryza sativa Japonica Group isolate UT1665 bHLH transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002455315.19e-65transcription factor bHLH69
TrEMBLC5XEV72e-63C5XEV7_SORBI; Uncharacterized protein
STRINGSb03g008290.13e-64(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141238117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66470.12e-42ROOT HAIR DEFECTIVE6