PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462863949
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family WRKY
Protein Properties Length: 229aa    MW: 25700.6 Da    PI: 11.2308
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462863949genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY78.76.5e-25176222348
                -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEE CS
       WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvv 48 
                D+y+WrKYGqK++kgs++pr+YY+C++  gCp++k+ver+++dp ++
  462863949 176 DEYSWRKYGQKPIKGSPYPRGYYKCSTVrGCPARKHVERATDDPAML 222
                9************************9888**************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.3E-8154172IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.6E-25162222IPR003657WRKY domain
PROSITE profilePS5081125.144169223IPR003657WRKY domain
SuperFamilySSF1182907.45E-21172223IPR003657WRKY domain
SMARTSM007741.5E-26174226IPR003657WRKY domain
PfamPF031063.2E-20176222IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MAQQHQQPIG EIADQAVSKF RKVISILDRT GHARFRRGPV EAPPVAPPPP AIAAPSPAPA  60
HVPVLHVAPV AAQPAPSSQP QSLTLDFTDL VLHRGHRRRG QRVQEPQPAL LREAAAVWTQ  120
EEALRRRALR SHHQRHPLPL LQEKQRHPRF EEMKNRVKRT IRVPAISSKI ADIPPDEYSW  180
RKYGQKPIKG SPYPRGYYKC STVRGCPARK HVERATDDPA MLVCPPPPP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-151722231565Probable WRKY transcription factor 4
2lex_A1e-151722231565Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462863949
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0855611e-75BT085561.2 Zea mays full-length cDNA clone ZM_BFc0033I19 mRNA, complete cds.
GenBankBT0864101e-75BT086410.2 Zea mays full-length cDNA clone ZM_BFc0163K13 mRNA, complete cds.
GenBankKJ7284151e-75KJ728415.1 Zea mays clone pUT6720 WRKY transcription factor (WRKY14) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002447056.13e-74WRKY transcription factor WRKY51
TrEMBLC5YFI17e-73C5YFI1_SORBI; Uncharacterized protein
STRINGSb06g027710.11e-73(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61738171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31550.21e-42WRKY DNA-binding protein 11