PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462864640
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB_related
Protein Properties Length: 572aa    MW: 64045.4 Da    PI: 5.7703
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462864640genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.12.8e-15375418146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rgr T++E+ l++++++++G++ W++Iar ++ gRt++++k++w++
        462864640 375 RGRITADEERLILELHAKWGSR-WSRIARSLP-GRTDNEIKNFWRT 418
                      899*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.200.205.6E-2250135No hitNo description
SuperFamilySSF561126.61E-8368367IPR011009Protein kinase-like domain
CDDcd066234.79E-15069334No hitNo description
PROSITE profilePS5001147.43971330IPR000719Protein kinase domain
SMARTSM002201.1E-8671330IPR000719Protein kinase domain
PfamPF000691.8E-6673330IPR000719Protein kinase domain
PROSITE patternPS00107077100IPR017441Protein kinase, ATP binding site
Gene3DG3DSA:1.10.510.102.7E-62136337No hitNo description
PROSITE patternPS001080189201IPR008271Serine/threonine-protein kinase, active site
SMARTSM0071719315371IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.5E-10352381IPR009057Homeodomain-like
PROSITE profilePS500904.612353369IPR017877Myb-like domain
SuperFamilySSF466895.56E-20353423IPR009057Homeodomain-like
PROSITE profilePS5129421.062370424IPR017930Myb domain
SMARTSM007171.0E-13374422IPR001005SANT/Myb domain
PfamPF002491.7E-13375418IPR001005SANT/Myb domain
CDDcd001678.52E-11379418No hitNo description
Gene3DG3DSA:1.10.10.603.1E-17382420IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006468Biological Processprotein phosphorylation
GO:0003677Molecular FunctionDNA binding
GO:0004672Molecular Functionprotein kinase activity
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 572 aa     Download sequence    Send to blast
MRGKKPVMDL KLAVPAQETP VDKFLTASGT FKDGELRLNQ RGLRLISEES GDENQSTNLK  60
VEDVQLSMDD LEMIQVIGKG SGGIVQLVRH KWVGTLYALK GIQMNIQEAM RKQIVQELKI  120
NQATQSPHIV MCHQSFYHNG VIYLVLEYMD RGSLADIIKQ VKTILEPYLA VLCKQVLEGL  180
LYLHHERHVI HRDIKPSNLL VNRKGEVKIT DFGVSAVLAS SMGQRDTFVG TYNYMAPERI  240
SGSSYDYKSD IWSLGLVILE CAIGRFPYIP SEGEGCLSFY ELLEAIVDQP PPSAPADQFS  300
PEFCSFISSC IQKDPAERMS ASELLNHPFI KKFEDKDLDL RILVESLEPP MNIPERTGKS  360
CRLRWVNYLH PGLRRGRITA DEERLILELH AKWGSRWSRI ARSLPGRTDN EIKNFWRTRT  420
RKMALEQRRH GHGDGKQTAS PSSSSVSSGS SGSRNSSGSS SPQVAESSAL QERSGDDDAE  480
LELEEATTTT AASQQYQYQE HGYTMDQLWN EIAAAEAAAA ASYVVDSWGA GGHGRAAVEL  540
PSSMPSPVWE FCSDYSLWRI DDDEYYKTLE AS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3sls_A4e-756534021292Dual specificity mitogen-activated protein kinase kinase 1
3sls_B4e-756534021292Dual specificity mitogen-activated protein kinase kinase 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462864640
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By low temperature (12 degrees Celsius) treatment. {ECO:0000269|PubMed:12177502}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0919170.0FP091917.1 Phyllostachys edulis cDNA clone: bphyem213a09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004960495.10.0mitogen-activated protein kinase kinase 1
SwissprotQ5QN750.0M2K1_ORYSJ; Mitogen-activated protein kinase kinase 1
TrEMBLK3Z7G70.0K3Z7G7_SETIT; Uncharacterized protein
STRINGSi022487m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP615144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.39e-38myb domain protein 59
Publications ? help Back to Top
  1. Kim CY, et al.
    Identification of rice blast fungal elicitor-responsive genes by differential display analysis.
    Mol. Plant Microbe Interact., 2000. 13(4): p. 470-4
    [PMID:10755311]
  2. Wen JQ,Oono K,Imai R
    Two novel mitogen-activated protein signaling components, OsMEK1 and OsMAP1, are involved in a moderate low-temperature signaling pathway in rice.
    Plant Physiol., 2002. 129(4): p. 1880-91
    [PMID:12177502]
  3. Xie G,Kato H,Imai R
    Biochemical identification of the OsMKK6-OsMPK3 signalling pathway for chilling stress tolerance in rice.
    Biochem. J., 2012. 443(1): p. 95-102
    [PMID:22248149]
  4. Kumar K,Sinha AK
    Overexpression of constitutively active mitogen activated protein kinase kinase 6 enhances tolerance to salt stress in rice.
    Rice (N Y), 2013. 6(1): p. 25
    [PMID:24280045]
  5. Wankhede DP,Kumar K,Singh P,Sinha AK
    Involvement of mitogen activated protein kinase kinase 6 in UV induced transcripts accumulation of genes in phytoalexin biosynthesis in rice.
    Rice (N Y), 2013. 6(1): p. 35
    [PMID:24295067]
  6. Kumar K,Sinha AK
    Genome-wide transcriptome modulation in rice transgenic lines expressing engineered mitogen activated protein kinase kinase 6.
    Plant Signal Behav, 2014. 9(3): p. e28502
    [PMID:24691103]
  7. Kamimura M,Han Y,Kito N,Che FS
    Identification of interacting proteins for calcium-dependent protein kinase 8 by a novel screening system based on bimolecular fluorescence complementation.
    Biosci. Biotechnol. Biochem., 2014. 78(3): p. 438-47
    [PMID:25036830]