PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462864655
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB_related
Protein Properties Length: 135aa    MW: 15212.1 Da    PI: 6.0086
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462864655genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.56.5e-0879110132
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg 32 
                      +g+WT+eEd +lv  v+++G ++W+  a+  g
        462864655  79 KGPWTEEEDAQLVWFVRLFGERRWDFLAKVSG 110
                      79***********************9999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.6974112IPR017877Myb-like domain
SuperFamilySSF466892.66E-775108IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.9E-878112IPR009057Homeodomain-like
PfamPF002494.1E-679110IPR001005SANT/Myb domain
CDDcd001672.37E-681112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MVLSVSPFRP FHVSTILSSD ASLSFFSNLG SNYIRREEDR EAGSEEEEMD HRSMASAETM  60
HSKMSKKGGE QQSPMAMRKG PWTEEEDAQL VWFVRLFGER RWDFLAKVSG LRGGGCIIIP  120
VHASSEQENS KSMHA
Cis-element ? help Back to Top
SourceLink
PlantRegMap462864655
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0854821e-49BT085482.2 Zea mays full-length cDNA clone ZM_BFc0018J19 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLK3Z8F61e-19K3Z8F6_SETIT; Uncharacterized protein
STRINGPavir.Ca00653.1.p3e-22(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3776533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.11e-13myb domain protein 48