PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462865649
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bHLH
Protein Properties Length: 247aa    MW: 27266.3 Da    PI: 8.864
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462865649genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.73.7e-12179224655
                HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +++Er RR ri +++ +L+ l+P+     +k  s a++L +Ave+I+ Lq
  462865649 179 SIAERERRTRISEKLRKLQALVPNM----DKQTSTADMLDLAVEHIRGLQ 224
                689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.373173223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.05E-15176240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.96E-12177228No hitNo description
Gene3DG3DSA:4.10.280.101.6E-14178237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-9179224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.5E-13179229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MHRYHQFGVE GTNHQDGGGT LPRHSSSPPG FFSSPVVDNG FPSARVGGGN EVHQTMSSYN  60
KKMKSPMNLP RQGTLTQISQ DTTEHMHAVG PSEENITTSN VVRSFSGGFS IGSWEDSNSI  120
AFSSPSSKAG IHNNDDIIAT LSNYELQFGV TKEANLQMQQ DQVPFRVRAK RGCATHPRSI  180
AERERRTRIS EKLRKLQALV PNMDKQTSTA DMLDLAVEHI RGLQSELQAL KEDKEKCTCR  240
GNHSSRS
Cis-element ? help Back to Top
SourceLink
PlantRegMap462865649
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002448088.21e-128transcription factor bHLH129 isoform X2
TrEMBLA0A2S3I7V01e-126A0A2S3I7V0_9POAL; Uncharacterized protein
TrEMBLA0A2T7CWM61e-126A0A2T7CWM6_9POAL; Uncharacterized protein
STRINGPavir.Gb01377.1.p1e-123(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141882026
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.12e-42bHLH family protein