PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462866710
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bHLH
Protein Properties Length: 372aa    MW: 40984.6 Da    PI: 9.7506
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462866710genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.82.6e-10152199454
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                ++  rE+ RRdr+N++f+eL  +l +    + +K +K++iL  A++ +++L
  462866710 152 TKACREKLRRDRLNERFNELCAILEPG---KPPKADKVAILSDATRLLSQL 199
                5678**********************9...99****************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.935148199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.23E-12150214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.53E-6152204No hitNo description
PfamPF000108.3E-8152199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-7154205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.5E-11155221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MSCAGGQSGS GGGWLLDYGL VEEEIQGSEF IYMVDDPAVS SVILGFDAPR KEDGVQDNSG  60
PKKRQSSYFL LTQFIDLKPS LACDWRHIRD AWRSAVRKSS GPVKWKPSTS LMQRASQTFR  120
TSSTDFEHMR AQFDGYSPLT RSRPESSAPP GTKACREKLR RDRLNERFNE LCAILEPGKP  180
PKADKVAILS DATRLLSQLR AEAQKLQKSN ESLQDSIKSL KAEKSELRDE KTRLKAERER  240
LEQMLKAVGA ASAPAQFVPH PPAXXXXPRP AAFWQWIPPT SLDTSKDPAH WPPVAFEDKM  300
NGCSRRRLAT GASSQARDPG WGGVPLVEAT MAAFTLAVMP PLPTRDLSPK VSKAAIDKLA  360
VLEPLSSHAN ST
Cis-element ? help Back to Top
SourceLink
PlantRegMap462866710
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1009801e-120FP100980.1 Phyllostachys edulis cDNA clone: bphyem120e16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003568328.13e-83transcription factor ILR3
TrEMBLA0A1D6M5M91e-115A0A1D6M5M9_MAIZE; Transcription factor bHLH104
STRINGLPERR05G14830.15e-85(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP93863136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.11e-50bHLH family protein