PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462866888
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family B3
Protein Properties Length: 203aa    MW: 22489.8 Da    PI: 10.1344
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462866888genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.71.3e-105465699
               TTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
         B3 56 sgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
               +g+ +l++GW eFv a+++ +g f+vF+++   ++ l+vkvf++
  462866888  5 GGGAFLGRGWPEFVAAHDIGVGWFLVFRHE--GGGMLTVKVFDT 46
               56689***********************65..58889*****97 PP
2B343.84.6e-14821641497
                T-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
         B3  14 grlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                + +v+p  f++++  ++ +++s++ +l ++ g+ W+v+   +k +++ +++++GW++F  +ng+ eg+ ++++++g++ f  +vkvf
  462866888  82 KKMVIPPAFVRNYitELAETNSQMPVLLSLCGKYWRVEA--EKDPSGnVFFSGGWSGFLASNGITEGEALLLRYEGNRVF--TVKVF 164
                459*******999**999999******************..777777699*************************99999..88877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.812147IPR003340B3 DNA binding domain
PfamPF023627.8E-8446IPR003340B3 DNA binding domain
CDDcd100172.60E-8445No hitNo description
SuperFamilySSF1019363.53E-10449IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.1E-9549IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.4E-1865169IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.12E-1966169IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.32369167IPR003340B3 DNA binding domain
CDDcd100173.26E-1370164No hitNo description
SMARTSM010197.8E-972167IPR003340B3 DNA binding domain
PfamPF023626.4E-1282164IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
AGRDGGGAFL GRGWPEFVAA HDIGVGWFLV FRHEGGGMLT VKVFDTSFCL RHFSRPLNVA  60
ANGRSRSRRP QFIKPRLPGF MKKMVIPPAF VRNYITELAE TNSQMPVLLS LCGKYWRVEA  120
EKDPSGNVFF SGGWSGFLAS NGITEGEALL LRYEGNRVFT VKVFGLDGCQ KSFGKSTKKM  180
PSGMQQETEQ SERTSSVSYL DAF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16270GRSRSRRPQ
Cis-element ? help Back to Top
SourceLink
PlantRegMap462866888
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004977888.11e-62putative B3 domain-containing protein Os04g0347400
RefseqXP_022684470.11e-62putative B3 domain-containing protein Os04g0347400
SwissprotQ7XS742e-56Y4474_ORYSJ; Putative B3 domain-containing protein Os04g0347400
TrEMBLA0A1E5W9E33e-60A0A1E5W9E3_9POAL; Putative B3 domain-containing protein
TrEMBLA0A368RU493e-61A0A368RU49_SETIT; Uncharacterized protein
TrEMBLA0A3L6PWP92e-59A0A3L6PWP9_PANMI; Prolyl 4-hydroxylase 1
TrEMBLK3Y7G45e-61K3Y7G4_SETIT; Uncharacterized protein
TrEMBLK3YCY53e-61K3YCY5_SETIT; Uncharacterized protein
STRINGPavir.Ga02236.1.p1e-65(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.19e-13B3 family protein