PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462867183
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB
Protein Properties Length: 342aa    MW: 38393.8 Da    PI: 9.385
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462867183genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.98.5e-171462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l+++++++G+g +W + +++ g++R++k+c++rw++yl
        462867183 14 KGPWSPEEDRKLKEYIHKYGTGgNWIALPHKAGLKRCGKSCRLRWLNYL 62
                     79*********************************************97 PP
2Myb_DNA-binding38.62.6e-1269111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g ++++Ed ++  +++  G++ W+ Ia+ ++ gRt++++k++w++
        462867183  69 GDFSEDEDRIICSLFATIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                      689******************.*********.***********97 PP
3Myb_DNA-binding38.62.6e-12155197246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g ++++Ed ++  +++  G++ W+ Ia+ ++ gRt++++k++w++
        462867183 155 GDFSEDEDRIICSLFATIGSR-WSIIAAQLP-GRTDNDIKNYWNT 197
                      689******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.256962IPR017930Myb domain
SuperFamilySSF466891.76E-2711109IPR009057Homeodomain-like
SMARTSM007171.4E-131364IPR001005SANT/Myb domain
PfamPF002493.9E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-241569IPR009057Homeodomain-like
CDDcd001672.97E-101662No hitNo description
PROSITE profilePS5129422.08363117IPR017930Myb domain
SMARTSM007176.9E-1267115IPR001005SANT/Myb domain
PfamPF002492.3E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.3E-2370118IPR009057Homeodomain-like
CDDcd001673.42E-871113No hitNo description
Gene3DG3DSA:1.10.10.603.0E-11134160IPR009057Homeodomain-like
SuperFamilySSF466897.27E-21134204IPR009057Homeodomain-like
PROSITE profilePS500904.077135148IPR017877Myb-like domain
PROSITE profilePS5129422.083149203IPR017930Myb domain
SMARTSM007176.9E-12153201IPR001005SANT/Myb domain
PfamPF002492.3E-11155197IPR001005SANT/Myb domain
CDDcd001673.42E-8157199No hitNo description
Gene3DG3DSA:1.10.10.603.7E-18161200IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MGRAPCCDKL SVKKGPWSPE EDRKLKEYIH KYGTGGNWIA LPHKAGLKRC GKSCRLRWLN  60
YLRPNIKHGD FSEDEDRIIC SLFATIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLMHA  120
LTRLHVCMGR AGLKRCGKSC RLRWLNYLRP NIKHGDFSED EDRIICSLFA TIGSRWSIIA  180
AQLPGRTDND IKNYWNTKLK KKLMHAHGLQ LATTSSQHRS KKQQQEQHLF ISSEAITPLP  240
LQDLSATPAH NFSHHYGSHC YDNTSTPSLL MFGGNGEQQM MMRSSSPDGG GAGLGLYFEL  300
CDHGHDSAVA AGLTMDSFIV QDDHHLKAPL LIASDVDGAN NT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C3e-27142036159MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-27142036159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462867183
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020393436.11e-115transcription factor MYB2 isoform X1
SwissprotQ9FKL22e-72MYB36_ARATH; Transcription factor MYB36
TrEMBLA0A1B6QB771e-79A0A1B6QB77_SORBI; Uncharacterized protein
STRINGSi030544m2e-78(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.11e-74myb domain protein 36
Publications ? help Back to Top
  1. Fernández-Marcos M, et al.
    Control of Arabidopsis lateral root primordium boundaries by MYB36.
    New Phytol., 2017. 213(1): p. 105-112
    [PMID:27891649]