PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462867401

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

Dof

Protein Properties

Length: 257aa MW: 26203 Da PI: 8.6846

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462867401	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.6	1.3e-38	24	80	6	62
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 l+cprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+s+ 462867401 24 LRCPRCDSANTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRSR 80 78****************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	2.7E-33	24	78	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	2.0E-26	24	77	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.385	24	78	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	26	62	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MRDPSIIHGW HGGRDGGAAA GGELRCPRCD SANTKFCYYN NYSLSQPRHF CKACKRYWTR 60 GGTLRNVPVG GGCRKNKRSR TTSSSGAGIA GRTSASASAA GTSSSAASAL APPHNTAGGS 120 SMQSLSQQQD ATGGIMDSFY APLLSGSLVP GLEELHVKAE AAGAGAGAEN TPHHQQQQKA 180 GSWEMPPSSN IDANIIASDA LMAAASMNHH AVVVSSTAPP ATATTTASSF MYWGGNGGAA 240 AAWPDLANCG SSIATLF

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462867401

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC582403	4e-79	KC582403.1 Sorghum bicolor dof6 protein (dof6) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025803596.1	6e-52	dof zinc finger protein 2-like
TrEMBL	A0A3L6QND1	6e-72	A0A3L6QND1_PANMI; Dof zinc finger protein DOF5.1-like
STRING	Traes_2BS_C94BD2E9F.1	8e-40	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60200.1	9e-33	TARGET OF MONOPTEROS 6