PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462867517
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB
Protein Properties Length: 179aa    MW: 19930.8 Da    PI: 9.431
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462867517genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.27.8e-181360148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W++eEde+lv++++ +G  +W+++++  g+ R++k+c++rw +yl
        462867517 13 RGLWSPEEDEKLVRYITAHGHSCWSSVPKNAGLQRCGKSCRLRWINYL 60
                     788*******************************************97 PP
2Myb_DNA-binding48.32.4e-1566109146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg  + +E+ +++d+++ lG++ W+ Ia++++ gRt++++k++w++
        462867517  66 RGTLSDQEERIIIDVHRILGNK-WAQIAKHLP-GRTDNEVKNFWNS 109
                      678899****************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.0E-26463IPR009057Homeodomain-like
PROSITE profilePS5129417.488860IPR017930Myb domain
SuperFamilySSF466896.68E-2810107IPR009057Homeodomain-like
SMARTSM007177.6E-131262IPR001005SANT/Myb domain
PfamPF002491.7E-151360IPR001005SANT/Myb domain
CDDcd001671.00E-101660No hitNo description
PROSITE profilePS5129425.08661115IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.8E-2464116IPR009057Homeodomain-like
SMARTSM007177.8E-1465113IPR001005SANT/Myb domain
PfamPF002491.1E-1366109IPR001005SANT/Myb domain
CDDcd001673.76E-1070108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MGHHCCSKQK VKRGLWSPEE DEKLVRYITA HGHSCWSSVP KNAGLQRCGK SCRLRWINYL  60
RPDLKRGTLS DQEERIIIDV HRILGNKWAQ IAKHLPGRTD NEVKNFWNSC IKKKLIAQGL  120
DPKTHNLLPA SKSLLRGANP SSAHGVGANA AFDLELMESC GFFGGGAGGN AMDQLQWDC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-30131157108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00350DAPTransfer from AT3G12720Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap462867517
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0040062e-52AP004006.5 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1197_D06.
GenBankAP0042592e-52AP004259.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0005E02.
GenBankAP0149632e-52AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126152e-52CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957753.12e-94transcription factor MYB61
SwissprotQ8LPH63e-66MYB86_ARATH; Transcription factor MYB86
TrEMBLK3ZU714e-93K3ZU71_SETIT; Uncharacterized protein
STRINGSi030152m8e-94(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97513545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.11e-84myb domain protein 67