PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462868147
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bHLH
Protein Properties Length: 326aa    MW: 36505.3 Da    PI: 6.7905
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462868147genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.37.3e-10220264554
                HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                h   Er+RR++++++f  Lr +lP+       K + a++L +A +Y++ L
  462868147 220 HVLSERKRREKLKDSFKALRNVLPPG-----SKKDRASTLIRARDYVNTL 264
                7789********************95.....49999**********9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.611215264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.13E-14217282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.22E-12217269No hitNo description
Gene3DG3DSA:4.10.280.105.4E-13219275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-7220264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-11221270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MDDCSCSEGS YGSAGLHEEP DVAISLQVEK QLKQARLTLL LACTCMVFVL HQIYLMMETE  60
EHGYTSSSTF PSLSGSSDDN SSLMLTGSTA TTTSFHLPAE ASSLKILPSP IAYDDDHHGL  120
FFENLEMIVN LDHLMTQEPH QEQGQSKKDS NFCGAFRPYF PYLSPRKKPK PGACSQRAIK  180
AAMSALERMH MARLANWQSY QMGMSAPPPS VDSSGDQLHH VLSERKRREK LKDSFKALRN  240
VLPPGSKKDR ASTLIRARDY VNTLKSRVSE LEEKSRMPVE TQVHGDQAAQ QDDYSTEQSG  300
RYDDKFLKES VIKIVKDAMK SERVMT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1223228ERKRRE
2224229RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMap462868147
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809512.15e-69putative transcription factor bHLH041 isoform X1
TrEMBLA0A1E5UQ256e-76A0A1E5UQ25_9POAL; Uncharacterized protein
STRINGSi024546m1e-75(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29003182
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.16e-18bHLH family protein