PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462868231
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bHLH
Protein Properties Length: 454aa    MW: 48035.9 Da    PI: 6.5108
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462868231genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.41.5e-09263310455
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +h+ +Er RR++i +++  L++l+P +    +k + Ka +L + ++Y++sLq
  462868231 263 SHSLAERVRREKISQRMKLLQDLVPGC----NKVVGKAVMLDEIINYVQSLQ 310
                8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.26E-16257328IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.92E-10257314No hitNo description
PROSITE profilePS5088815.256259309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-16261327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-6263310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-10265315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MNCGPPDQMP QATAPSCFLN LNWDQSMAAA GTADHLDPAL SSMYGGTPLS SPPKLNLSMM  60
GQFHHYPPPQ VGGAGAAGLP ILENLMPMGH LDQFLSDPGF AERAARLSGF DGRAGGAGYG  120
GAVPGQFGLP DAGPVGALKE LELGNGRDES SVSDPASASA GMALKAPSDG NAKKRKASGK  180
GKGKDGPVST SAKDLAKEES SGKRCKSSDE SNGAEENSAK GKAAQSTSEN GGKKQGKDST  240
SKPPEPPKDY IHVRARRGEA TDSHSLAERV RREKISQRMK LLQDLVPGCN KVVGKAVMLD  300
EIINYVQSLQ RQVEFLSMKL ATVNPQLDFN NLPNLLSKDM QQSCGPLQNS HFPLETSGAP  360
MAYINQGNPL GCSLTNGMDN QSSMQPLDPA FCRPMNSLHP FLNGVSDSTS QVGTFWQDDL  420
QSVVHMDMGQ SQEMATSSNS YNGSLQTVHM KMEL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00036PBMTransfer from AT5G48560Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap462868231
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002458978.10.0transcription factor bHLH79
RefseqXP_004971039.10.0transcription factor bHLH77
TrEMBLA0A2R4QNN30.0A0A2R4QNN3_9POAL; BHLH transcription factor
STRINGSi001242m0.0(Setaria italica)
STRINGSb03g043690.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91938137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.11e-63bHLH family protein