PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462868354
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family WRKY
Protein Properties Length: 534aa    MW: 56327.9 Da    PI: 4.7103
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462868354genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.32.1e-30285344159
                ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                ++Dg++WrKYGqK+ kg+++pr+YYrCt a gCpv+k+v+r+ ed +++++tYeg+Hnh+
  462868354 285 MNDGCQWRKYGQKVAKGNPCPRAYYRCTVApGCPVRKQVQRCLEDMSILVTTYEGTHNHP 344
                58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.6E-32270346IPR003657WRKY domain
SuperFamilySSF1182902.75E-27278346IPR003657WRKY domain
PROSITE profilePS5081128.529280346IPR003657WRKY domain
SMARTSM007741.4E-37285345IPR003657WRKY domain
PfamPF031069.4E-27286344IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MSSKKTIDLS LEVVEQREDD RTTGGNGDGR SKDGEKDKQE GQLKKQGEAP KEETNDEKVV  60
EVGVDQGESS KEEIKYGTQP GEEMEVDKKS AEEGDGDGES DGSQTRAEDK HVVEAAGSDN  120
HNTMEQEEVS AMQEEMEKMK EENQMLRRVV DRTVRDYYEL QMKLAAYQQQ PADEPKEPEV  180
FLSLGASAAA AATTGGLPGS DDTDDGKEDL GLSLSLGSYE EEKLEAAHDH DGGGRAKGYA  240
LLESSKLGPP AAGDLASAGI TSQSVNPANR KTRVSVRVRC QGPTMNDGCQ WRKYGQKVAK  300
GNPCPRAYYR CTVAPGCPVR KQVQRCLEDM SILVTTYEGT HNHPLPVGAT AMASTTSAAA  360
TFMLLSSTSS TSSISDAGGA TAAPPYLSPY LLNSTSQHSS ASPFLSTPSS MPGASGSSGM  420
QHLNLFGHSS MLGAQQAPHL NKYPWSSPST QGTGGGLTGG KRPFWSTSGG DEKAATLPDN  480
VGAVVSDPSK FSVAIAAAIN SFMGKDGQVV GGKDGESSSK SSNKWGVVES LPPP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-21272348176WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462868354
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3632472e-82AK363247.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2013L09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022681574.10.0probable WRKY transcription factor 9
TrEMBLK3YR970.0K3YR97_SETIT; Uncharacterized protein
STRINGSi016791m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80223446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.13e-51WRKY DNA-binding protein 9