PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462868440
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family HSF
Protein Properties Length: 116aa    MW: 12642.4 Da    PI: 10.0309
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462868440genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind79.55.4e-252484262
                  HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTE CS
  HSF_DNA-bind  2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgF 62
                  Fl+k+++++e+++++e+isw e+g+sfvv+++ efa+++Lp +Fkhsnf+SFvRQLn+Y+ 
     462868440 24 FLTKTHQMVEERATDEVISWAEQGRSFVVWKPVEFARDLLPLHFKHSNFSSFVRQLNTYNL 84
                  9**********************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.0E-261984IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.0E-2120110IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467857.35E-232088IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.3E-142447IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.9E-212486IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-146274IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-147587IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 116 aa     Download sequence    Send to blast
MATAAAGQPA KAGGRGGGGG PAPFLTKTHQ MVEERATDEV ISWAEQGRSF VVWKPVEFAR  60
DLLPLHFKHS NFSSFVRQLN TYNLAEPPLV TTSGRAHMFH CSFLLRVGSL FTNLNA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1hks_A3e-161794177HEAT-SHOCK TRANSCRIPTION FACTOR
1hkt_A3e-161794177HEAT-SHOCK TRANSCRIPTION FACTOR
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11219GGRGGGGG
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462868440
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7277542e-85KJ727754.1 Zea mays clone pUT5697 HSF transcription factor (HSF21) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001150318.13e-40uncharacterized protein LOC100283948
SwissprotQ67TP97e-35HSFB1_ORYSJ; Heat stress transcription factor B-1
TrEMBLB6TNF28e-39B6TNF2_MAIZE; Heat shock factor protein 4
STRINGGRMZM2G139535_P024e-38(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.15e-27HSF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Grand X, et al.
    Identification of positive and negative regulators of disease resistance to rice blast fungus using constitutive gene expression patterns.
    Plant Biotechnol. J., 2012. 10(7): p. 840-50
    [PMID:22607456]