PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462868443
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family ERF
Protein Properties Length: 146aa    MW: 15677.2 Da    PI: 4.3035
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462868443genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.26.3e-21250355
        AP2  3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
               ++GVr+++ +g+W+AeIrdp+    r +r +lg+f+taeeAa+a+++a+++++g
  462868443  2 FRGVRQRP-WGKWAAEIRDPR----RaARKWLGTFDTAEEAARAYDRAALEFRG 50
               79******.**********82....48*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.6E-38164IPR001471AP2/ERF domain
PROSITE profilePS5103225.093158IPR001471AP2/ERF domain
PfamPF008477.1E-15250IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-23259IPR016177DNA-binding domain
PRINTSPR003671.8E-11213IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-31258IPR001471AP2/ERF domain
CDDcd000181.06E-30259No hitNo description
PRINTSPR003671.8E-112440IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MFRGVRQRPW GKWAAEIRDP RRAARKWLGT FDTAEEAARA YDRAALEFRG PRARLNFPYG  60
QEEEPLPSCG GGGGDSTAAA NAGTTVTALT PQSSCSAGAE ESAPGEWQLG GGGADGEGDE  120
LWDGFQDLMK MDETDFWFPP FPGAAC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-21258663ATERF1
3gcc_A2e-21258663ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462868443
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9644534e-56EU964453.1 Zea mays clone 278992 AP2 domain containing protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006660699.14e-54PREDICTED: ethylene-responsive transcription factor ERF109-like
TrEMBLJ3MY508e-53J3MY50_ORYBR; Uncharacterized protein
STRINGOB09G19290.11e-53(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124236124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33710.11e-21ERF family protein