PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462868611
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB_related
Protein Properties Length: 287aa    MW: 31464 Da    PI: 4.6916
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462868611genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.61.4e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd++lv +++q+G ++W++ ++  g+ R++k+c++rw +yl
        462868611 14 KGAWSAEEDQRLVAYIRQHGHPNWRALPKQAGLLRCGKSCRLRWINYL 61
                     79******************************99************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-24564IPR009057Homeodomain-like
PROSITE profilePS5129423.789965IPR017930Myb domain
SMARTSM007173.2E-131363IPR001005SANT/Myb domain
PfamPF002491.4E-151461IPR001005SANT/Myb domain
SuperFamilySSF466891.18E-221587IPR009057Homeodomain-like
CDDcd001673.34E-111661No hitNo description
PROSITE profilePS500904.3686294IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.0E-86587IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MGRAPCCEKE GLRKGAWSAE EDQRLVAYIR QHGHPNWRAL PKQAGLLRCG KSCRLRWINY  60
LRPDIKRGNF TADEEDLIVR LHQELGNSDI SCITMLSFIR HLQSAPGPRT LLIAYVVRDG  120
RAAAGAHRQR DQERVAHPPQ EEAEKRGRRW QCRPEEAAAQ EADVDGDGDA PSSFTAPSPG  180
LSSSVSSGVT CSTATESTAA VSSADNAATT SASQPGVKTE EMESFSTAEF PPIDESFWTS  240
ADVMDMDLGA MDEELGLASS ASTRDEDMEF WLKMLLESGD MRDLSAM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-1312872599MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462868611
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0837685e-97BT083768.1 Zea mays full-length cDNA clone ZM_BFb0037L06 mRNA, complete cds.
GenBankKJ7268985e-97KJ726898.1 Zea mays clone pUT3443 MYB transcription factor (MYB121) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025798367.11e-102transcription factor MYB30-like
TrEMBLA0A0A9HAP11e-107A0A0A9HAP1_ARUDO; Myb39
STRINGPavir.J09313.1.p1e-103(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06180.15e-48myb domain protein 13