PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462869196
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB_related
Protein Properties Length: 80aa    MW: 8814.91 Da    PI: 8.065
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462869196genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.57.3e-091444130
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIart 30
                     +g+W++eEd +l++ ++++G+g +W + +++
        462869196 14 KGPWSPEEDAKLKEFIEKHGTGgNWIALPQK 44
                     79********************999777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-11544IPR009057Homeodomain-like
PROSITE profilePS500907.039968IPR017877Myb-like domain
SuperFamilySSF466898.22E-81153IPR009057Homeodomain-like
PfamPF002498.7E-81445IPR001005SANT/Myb domain
CDDcd001673.51E-51640No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 80 aa     Download sequence    Send to blast
MGRAPCCDKN NVKKGPWSPE EDAKLKEFIE KHGTGGNWIA LPQKAERQVC GRAARLAYES  60
SEPFSLVLRF EGANHQAGSD
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462869196
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002446179.12e-28transcription factor RAX2
RefseqXP_004975125.12e-28transcription factor RAX2
SwissprotQ9SJL75e-27RAX2_ARATH; Transcription factor RAX2
TrEMBLA0A0D9W2R65e-28A0A0D9W2R6_9ORYZ; Uncharacterized protein
STRINGLPERR04G03110.18e-29(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36890.12e-29MYB family protein
Publications ? help Back to Top
  1. Guo D, et al.
    The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis.
    Plant Cell, 2015. 27(11): p. 3112-27
    [PMID:26578700]