PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462869308
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family WRKY
Protein Properties Length: 254aa    MW: 27272.6 Da    PI: 9.3894
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462869308genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY64.51.8e-20125162238
                --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEE CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkv 38 
                +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v
  462869308 125 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAaGCPVRKQV 162
                7***************************99*******9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.9E-27118197IPR003657WRKY domain
SuperFamilySSF1182906.93E-22119197IPR003657WRKY domain
PROSITE profilePS5081123.893119197IPR003657WRKY domain
SMARTSM007741.6E-29124196IPR003657WRKY domain
PfamPF031065.0E-24126195IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MAVGVDPRGS DCSPSSSKLV ADTAASTPMD YCPGTGNGGM LPLPTFDHHR RRSPEEAQGW  60
LPNKVPKFLP AKGPEPVPEA ATMRKARVSV RARSEAPMVI NHLIKRLGIY PNLESRIVHD  120
EMQISDGCQW RKYGQKMAKG NPCPRAYYRC TMAAGCPVRK QVMNGGVWCG VLQVQRCAED  180
RTVLITTYEG NHNHPLPPAA MAMASTTAAA ASMLLSGSMP SADGSLMAGS NFLARAVLPC  240
SSSCKRCLRV SMGI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-181241991476WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000250, ECO:0000269|PubMed:25733771}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462869308
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1209867e-96AC120986.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1781_H11, complete sequence.
GenBankAP0149617e-96AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126137e-96CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807048.14e-90WRKY transcription factor 42-like isoform X1
RefseqXP_025807049.12e-90probable WRKY transcription factor 31 isoform X2
RefseqXP_025807050.12e-90probable WRKY transcription factor 31 isoform X2
SwissprotQ9XEC32e-67WRK42_ARATH; WRKY transcription factor 42
TrEMBLA0A1E5W9Z01e-94A0A1E5W9Z0_9POAL; WRKY transcription factor 42
STRINGPavir.Ca00949.1.p2e-92(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP126952734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.12e-50WRKY family protein