PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462870487
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB_related
Protein Properties Length: 600aa    MW: 66546.3 Da    PI: 4.4768
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462870487genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.66.1e-133275146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     +g W+ eEd ll +a k lG++ W+ Ia+ +  gRt++ +k+r+ +
        462870487 32 KGGWSREEDMLLCEAQKVLGNR-WTEIAKVVS-GRTDNAVKNRFST 75
                     688*******************.*********.**********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.019126IPR017930Myb domain
CDDcd001674.24E-5326No hitNo description
Gene3DG3DSA:1.10.10.602.0E-11335IPR009057Homeodomain-like
SuperFamilySSF466899.94E-25584IPR009057Homeodomain-like
PROSITE profilePS5129419.7672781IPR017930Myb domain
SMARTSM007171.4E-133179IPR001005SANT/Myb domain
PfamPF002494.0E-113275IPR001005SANT/Myb domain
CDDcd001677.77E-103576No hitNo description
Gene3DG3DSA:1.10.10.608.3E-153685IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009553Biological Processembryo sac development
GO:0010052Biological Processguard cell differentiation
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 600 aa     Download sequence    Send to blast
MIWTLIAAQF RDKTARQCRR RWYNYLNSEC KKGGWSREED MLLCEAQKVL GNRWTEIAKV  60
VSGRTDNAVK NRFSTLCKRR AKDEEPYSES GTPCSNANAK RVLTQIRCLT PGAAESSLPM  120
KPISSDLKEN IIPNMRLFGQ EKGAPDARQP LAIISSSNKD NVKIVETQNL VAKNVTKQLT  180
GVKREREGSF LNKDDPKVAT LLQQADLLSS LAVKIKTENT SQSMDEAWQQ LQHHLVKKDD  240
SEMSESSMSG MASLLDELDD LIVDPYENKK EDEQKQREQN EPINEHDEHC NASSQDSKEV  300
ISHMASDEMM DDCPIDVIDH SSLSKNTLSG NVEPCPGTEI PASEKLSEVA EDSMLHCMES  360
TPPVVTDFDD LIVDPYEGTE EDEQKLREES GQIDVHGEHS KGSTQTSMEL TPDMAPVLNM  420
EDCPVDNCRE DNSLCISMLS GTMESCPDAE HPASEYLCEV AEDCMLQGAE SASPVQTNSQ  480
SKECAEIPVS ENHSEVAEGS RLQGIEFSSP AHMVLQEKAG AFASPKFGEV RKDNKLPSAE  540
FMSPAHTVPT FQPYEADMPT PKFTASERNF LLSVLELTSP GSKPETSQQP SCKRALLNSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-2538030107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462870487
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF9519136e-55JF951913.1 Triticum carthlicum clone TaMYB30 R2R3-MYB protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022680418.10.0transcription factor MYB88 isoform X2
TrEMBLA0A2T7EYZ60.0A0A2T7EYZ6_9POAL; Uncharacterized protein
TrEMBLK3ZRB20.0K3ZRB2_SETIT; Uncharacterized protein
STRINGPavir.J36475.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89033847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14350.21e-57MYB family protein