PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462871422

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

HD-ZIP

Protein Properties

Length: 249aa MW: 26310.3 Da PI: 9.5328

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462871422	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.3	1.5e-19	110	164	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++k+q +Lee+F+ +++++ +++ LA++lgL rqV vWFqNrRa+ k 462871422 110 RKKLRLSKDQAAVLEECFKTHSTLNPKQKVALANRLGLRPRQVEVWFQNRRARTK 164 678899***********************************************98 PP
2	HD-ZIP_I/II	98.1	8.7e-32	110	171	1	62
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkd 62 +kk+rlsk+q+++LEe+F+++++L+p++Kv+la++Lgl+prqv+vWFqnrRARtk+kq+E 462871422 110 RKKLRLSKDQAAVLEECFKTHSTLNPKQKVALANRLGLRPRQVEVWFQNRRARTKLKQTEPS 171 69*********************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.5E-18	94	164	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.68E-18	98	167	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.536	106	166	IPR001356	Homeobox domain
SMART	SM00389	1.1E-16	108	170	IPR001356	Homeobox domain
CDD	cd00086	9.16E-17	110	167	No hit	No description
Pfam	PF00046	7.0E-17	110	164	IPR001356	Homeobox domain
PRINTS	PR00031	3.1E-5	137	146	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	141	164	IPR017970	Homeobox, conserved site
PRINTS	PR00031	3.1E-5	146	162	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MMMPQQQQQQ SLDLGLSLGG LTSQGSLSSS TVVGDVSRRE AQHAVAMDPD HQAGTTMRAS 60 TSPESAAALS SGDSNNNKRE REELLERTGS GGVRGAGSDE EDGADGAGGR KKLRLSKDQA 120 AVLEECFKTH STLNPKQKVA LANRLGLRPR QVEVWFQNRR ARTKLKQTEP SSAATLTMCP 180 SCRRVATTGG GANNQQQCHP KSNVPSAAVV AGGSVLPSHC QFFPAAVDRT GGQSTWNAAA 240 APLVTRELF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	158	166	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269\|PubMed:10732669}.
UniProt	Probable transcription factor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269\|PubMed:10732669}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462871422

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP093288	1e-91	FP093288.1 Phyllostachys edulis cDNA clone: bphylf053m07, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025811981.1	7e-95	homeobox-leucine zipper protein HOX2-like
Swissprot	Q5VPE3	3e-58	HOX2_ORYSJ; Homeobox-leucine zipper protein HOX2
Swissprot	Q84U86	3e-58	HOX2_ORYSI; Homeobox-leucine zipper protein HOX2
TrEMBL	A0A2S3HLX7	2e-93	A0A2S3HLX7_9POAL; Uncharacterized protein
STRING	Si007019m	2e-92	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3842	33	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	4e-32	homeobox from Arabidopsis thaliana

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]