PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462871726
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family GRAS
Protein Properties Length: 262aa    MW: 28933.9 Da    PI: 4.7239
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462871726genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS192.13.7e-591259123373
       GRAS 123 lQWpaLlqaLasRpegppslRiTgvgspesg.......skeeleetgerLakfAeelgvpfefnvl.......vakrledleleeLrvkpgEalaVnlvl 208
                +Q p+L++ LasR+egpp lR+T+ + ++s+        + ++ e+g +L  fA++ +v++ef+v+        a+ +++l++++L  +  Eal+Vn+++
  462871726   1 MQIPTLIDMLASRAEGPPLLRLTVADVAASSanspppaLNVSYDELGAKLVGFARSRNVSMEFRVVpaspadaFASLVDQLRVQQLVSDGTEALVVNCHM 100
                7***********************98877777889988888999**********************888777666677778888888888********** PP

       GRAS 209 qlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrer 308
                 lh+++de++  +     +Lk +++l P +vvvve++ad ++++ + r+  a+++++  +d++++ lp+ se+r+++E+e +g++++nv+a+eg er+er
  462871726 101 LLHTVPDETAVRTM----LLKSIRTLDPALVVVVEEDADFTAGDVVGRLRAAFNFMWIPYDAVDTFLPKGSEQRRWYEAE-VGWKVENVLAQEGVERVER 195
                ******88777666....**************************************************************.******************* PP

       GRAS 309 hetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                +e  ++W +r+++aGF++v+++e++a ++k++l++++  g+ ++ e++ lvl+Wk++++v++SaW
  462871726 196 QEDRARWGQRMRSAGFRAVAFNEDTAGEVKAMLNEHA-AGWGMKREDDDLVLTWKGHNVVFASAW 259
                *************************************.889999********************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098530.1551241IPR005202Transcription factor GRAS
PfamPF035141.3E-561259IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MQIPTLIDML ASRAEGPPLL RLTVADVAAS SANSPPPALN VSYDELGAKL VGFARSRNVS  60
MEFRVVPASP ADAFASLVDQ LRVQQLVSDG TEALVVNCHM LLHTVPDETA VRTMLLKSIR  120
TLDPALVVVV EEDADFTAGD VVGRLRAAFN FMWIPYDAVD TFLPKGSEQR RWYEAEVGWK  180
VENVLAQEGV ERVERQEDRA RWGQRMRSAG FRAVAFNEDT AGEVKAMLNE HAAGWGMKRE  240
DDDLVLTWKG HNVVFASAWA PL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B1e-272261212474Protein SHORT-ROOT
5b3h_B6e-282261158420Protein SHORT-ROOT
5b3h_E6e-282261158420Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462871726
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2432381e-158AC243238.1 Panicum virgatum clone PV_ABa020-K10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004958182.11e-169scarecrow-like protein 32
SwissprotQ9SN221e-105SCL32_ARATH; Scarecrow-like protein 32
TrEMBLA0A2T7EY271e-167A0A2T7EY27_9POAL; Uncharacterized protein
TrEMBLK3ZT661e-167K3ZT66_SETIT; Uncharacterized protein
STRINGSi029796m1e-168(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56973759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.15e-99GRAS family protein