PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462871747

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

LBD

Protein Properties

Length: 147aa MW: 15465.9 Da PI: 8.2213

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462871747	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	90.5	2.1e-28	2	113	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf...............paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +C++C+vlr++C+++Cvl+p++ +++q +++ +v+k+FG++ ++++l+a+pe +r+++++sl+yeA r+ +Pv+Gavg++ ++++ 462871747 2 SCNGCRVLRKGCSEECVLRPCLhggcalrpclqwidtAEAQGHATVFVAKFFGRAGLMSFLTAVPEPQRPAVFQSLLYEAAGRTINPVSGAVGLLGSGSW 101 6*******************************99777889****************************************************** PP DUF260 86 qleqlkaelall 97 +l+q+++e++l+ 462871747 102 HLCQAAVETVLR 113 ****999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	17.503	1	117	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.6E-24	2	111	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006807	Biological Process	nitrogen compound metabolic process
GO:0060776	Biological Process	simple leaf morphogenesis

Sequence ? help Back to Top
Protein Sequence Length: 147 aa Download sequence Send to blast
MSCNGCRVLR KGCSEECVLR PCLHGGCALR PCLQWIDTAE AQGHATVFVA KFFGRAGLMS 60 FLTAVPEPQR PAVFQSLLYE AAGRTINPVS GAVGLLGSGS WHLCQAAVET VLRGGAIRPL 120 PEFDAGGRAA VTDDRHKSAP APVLPPV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462871747

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT065439	1e-99	BT065439.1 Zea mays full-length cDNA clone ZM_BFb0156D21 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004958181.1	3e-70	LOB domain-containing protein 37
Swissprot	Q9FN11	2e-62	LBD37_ARATH; LOB domain-containing protein 37
TrEMBL	A0A3L6QUY9	2e-69	A0A3L6QUY9_PANMI; LOB domain-containing protein 37-like
STRING	Pavir.Bb01170.1.p	7e-70	(Panicum virgatum)
STRING	Si031011m	1e-69	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4084	36	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67420.1	2e-57	LOB domain-containing protein 37

Publications ? help Back to Top
Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465]