PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462871998
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C2H2
Protein Properties Length: 368aa    MW: 41912.3 Da    PI: 10.4702
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462871998genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.000256182223
               EETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
               +C+ C+k F +  nL+ H r H
  462871998 61 VCKVCNKGFQHEQNLQLHHRGH 82
               7******************988 PP
2zf-C2H212.30.0005136158123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                +kC +C+k++  +s+ k H +t+
  462871998 136 WKCDKCNKHYAVQSDWKAHSMTC 158
                58*****************9887 PP
3zf-C2H2188e-06237259123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++C+ C+k F r  nL+ H r H
  462871998 237 FVCEVCNKGFQREQNLQLHRRGH 259
                89*******************88 PP
4zf-C2H213.80.00017313335123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                +kC +C+k++  +s+ k H +t+
  462871998 313 WKCDKCNKRYAVQSDWKAHSKTC 335
                58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.0146087IPR007087Zinc finger, C2H2
SMARTSM003550.0996082IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.8E-46183IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.37E-56182No hitNo description
PfamPF128740.0126178No hitNo description
PROSITE patternPS0002806282IPR007087Zinc finger, C2H2
SuperFamilySSF576671.37E-5131156No hitNo description
SMARTSM00355160136156IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.6E-6236259IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.31E-7236259No hitNo description
SMARTSM003550.0041237259IPR015880Zinc finger, C2H2-like
PfamPF121712.2E-5237259IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015711.094237259IPR007087Zinc finger, C2H2
PROSITE patternPS000280239259IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.9E-5301334IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.31E-7308333No hitNo description
SMARTSM00355110313333IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MCKVSNKGHR HANAATACFF TQTVTAATAP KRKRNQPGNP NPDAEVTVLS PWTLLAMNQI  60
VCKVCNKGFQ HEQNLQLHHR GHNRPWKLKQ KNPKENQRKV YLFPEPTCMN HDPSRALRDL  120
TGIKKHFCRK HGEKKWKCDK CNKHYAVQSD WKAHSMTCGT RKYRCDCGTL LSSTTATSTA  180
RRSGSATSAT PCSPTGRCTP SRVARASTTA IAAPSSQDPD AEVIALSPRT LLATNRFVCE  240
VCNKGFQREQ NLQLHRRGHN LPWKLKQKNP KENRRKVYLC PEPSCVHHDP SRALGDLTGI  300
KKHFCRKHGE KKWKCDKCNK RYAVQSDWKA HSKTCGTREY RCDCGTLFSR SVPFFLCRLC  360
FWLVLLPF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C7e-21132355352Zinc finger protein JACKDAW
5b3h_F7e-21132355352Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462871998
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY7548651e-159AY754865.1 Zea mays INDETERMINATE-related protein 7 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001241804.24e-93uncharacterized protein LOC542697
RefseqXP_008648994.15e-93uncharacterized protein LOC542697 isoform X5
RefseqXP_008649003.15e-93uncharacterized protein LOC542697 isoform X5
RefseqXP_008649023.14e-93uncharacterized protein LOC542697 isoform X7
RefseqXP_015695695.13e-93PREDICTED: protein indeterminate-domain 5, chloroplastic-like, partial
RefseqXP_020396172.15e-93uncharacterized protein LOC542697 isoform X5
SwissprotQ8RWX78e-86IDD6_ARATH; Protein indeterminate-domain 6, chloroplastic
TrEMBLA0A1D6KMW84e-92A0A1D6KMW8_MAIZE; Indeterminate domain p1
TrEMBLA0A1D6KMX09e-92A0A1D6KMX0_MAIZE; Indeterminate domain p1
TrEMBLB6UFE21e-91B6UFE2_MAIZE; INDETERMINATE-related protein 1
TrEMBLB7ZXB41e-91B7ZXB4_MAIZE; Indeterminate domain p1
STRINGPavir.Fa00016.1.p9e-92(Panicum virgatum)
STRINGSi029540m8e-92(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14580.22e-87C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Bustillo-Avendaño E, et al.
    Regulation of Hormonal Control, Cell Reprogramming, and Patterning during De Novo Root Organogenesis.
    Plant Physiol., 2018. 176(2): p. 1709-1727
    [PMID:29233938]