PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462872100
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family GRAS
Protein Properties Length: 306aa    MW: 33140 Da    PI: 8.7897
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462872100genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS77.23e-242613124114
       GRAS  24 LarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn..............sseelaalklfsevsPilkfshltaNqaIleaveg 108
                L  l+  asp gd+mqR+a+yf+ ALaarl+  s+s+ +++ ++ +++                 s e+l++++++++++P++kf+h+taNqaI ea++g
  462872100  26 LHLLRRVASPLGDSMQRVASYFADALAARLTTlSSSNPSSSAAAATAPCGAaanaagvfpfpfppSPETLKIYQILYQACPYIKFAHFTANQAIFEAFAG 125
                6678889***********************9953333333332222222223445688888888888888888*************************** PP

       GRAS 109 eervHi 114
                e+rvH+
  462872100 126 EDRVHV 131
                *****9 PP
2GRAS199.12.7e-61135305199374
       GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv 298
                gEalaVn v +lhr++   ++l      +L+++++  Pk++++veqea hn++ Fl rfleal+yysa+fdsl+a++p++s  r+kvE+ ll++ei+nvv
  462872100 135 GEALAVNAVNRLHRVP--GAHLG----PLLSMIRDQAPKIMTLVEQEAGHNGPYFLGRFLEALHYYSAIFDSLDATFPADSAPRMKVEQCLLAPEIRNVV 228
                9**************9..44444....5************************************************************************ PP

       GRAS 299 acegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                acegaer++rhe+l +Wr+ +e  GF+pvpls  a+ q + ll  ++ +dgyr+ e++g+l+lgW+dr+++++SaW+
  462872100 229 ACEGAERVARHERLDRWRRIMEGRGFEPVPLSPAAVGQSQVLLGLYGaGDGYRLTEDKGCLLLGWQDRAIIAASAWQ 305
                ****************************************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098527.3411284IPR005202Transcription factor GRAS
PfamPF035141.0E-2126131IPR005202Transcription factor GRAS
PfamPF035149.5E-59135305IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MDAGAGQRAS AGAPPPGLRR LRLRHLHLLR RVASPLGDSM QRVASYFADA LAARLTTLSS  60
SNPSSSAAAA TAPCGAAANA AGVFPFPFPP SPETLKIYQI LYQACPYIKF AHFTANQAIF  120
EAFAGEDRVH VRRVGEALAV NAVNRLHRVP GAHLGPLLSM IRDQAPKIMT LVEQEAGHNG  180
PYFLGRFLEA LHYYSAIFDS LDATFPADSA PRMKVEQCLL APEIRNVVAC EGAERVARHE  240
RLDRWRRIME GRGFEPVPLS PAAVGQSQVL LGLYGAGDGY RLTEDKGCLL LGWQDRAIIA  300
ASAWQC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-36127304205378Protein SCARECROW
5b3h_A1e-36127304204377Protein SCARECROW
5b3h_D1e-36127304204377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269|PubMed:23122845}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462872100
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269|PubMed:23122845}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126191e-121CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006663470.21e-145PREDICTED: DELLA protein DWARF8-like
SwissprotG7L1661e-101RAM1_MEDTR; GRAS family protein RAM1
TrEMBLJ3N8K31e-149J3N8K3_ORYBR; Uncharacterized protein
STRINGOB11G21390.11e-150(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92213141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.11e-49RGA-like 2
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]
  2. Pecrix Y, et al.
    Whole-genome landscape of Medicago truncatula symbiotic genes.
    Nat Plants, 2018. 4(12): p. 1017-1025
    [PMID:30397259]