PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462872472
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bZIP
Protein Properties Length: 191aa    MW: 21189.6 Da    PI: 7.843
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462872472genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_154.82e-17111162152
                XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 
                e+elk+++rkq+NRe+ArrsR+RK+ae ee +++++ L++eN++Lk+el++l
  462872472 111 ERELKKQKRKQSNRESARRSRLRKQAEWEEVANRADLLKQENSSLKEELKQL 162
                89************************************************98 PP
2bZIP_1231.7e-071561862555
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1  25 kaeieeLeekvkeLeaeNkaLkkeleelkke 55 
                k+e+++L+ekv++L++eN++L ++l+el++e
  462872472 156 KEELKQLQEKVDSLTSENTSLHEKLKELEDE 186
                799**************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1705.9E-15106169No hitNo description
PfamPF001701.2E-16111166IPR004827Basic-leucine zipper domain
SMARTSM003381.3E-19111175IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.771113176IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.5E-10114170No hitNo description
CDDcd147021.97E-18116167No hitNo description
PROSITE patternPS000360118133IPR004827Basic-leucine zipper domain
PfamPF165591.1E-6146178IPR032352Arf GTPase-activating protein GIT1/2, coiled-coil domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MTKWYNQIIF LQGSRVKDGS EHGQSNDAKG TQGSAVEPTQ PSSGPVVLNP MMPFWPVHPP  60
MAGPATTVNM GGDYWGAPTS VPMHGKIVAA PTSAPSSNSR DVLSDPAIQD ERELKKQKRK  120
QSNRESARRS RLRKQAEWEE VANRADLLKQ ENSSLKEELK QLQEKVDSLT SENTSLHEKL  180
KELEDEKSNG N
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1127133RRSRLRK
2127134RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462872472
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0665281e-157BT066528.1 Zea mays full-length cDNA clone ZM_BFb0014J02 mRNA, complete cds.
GenBankJX4699241e-157JX469924.1 Zea mays subsp. mays clone UT3180 bZIP-type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985057.11e-111bZIP transcription factor 16
RefseqXP_022678888.11e-111bZIP transcription factor 16
SwissprotQ501B24e-37BZP16_ARATH; bZIP transcription factor 16
TrEMBLK4AMZ01e-110K4AMZ0_SETIT; Uncharacterized protein
STRINGSi040286m1e-111(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115063238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.17e-38basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]