PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462872499
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB_related
Protein Properties Length: 718aa    MW: 79421.8 Da    PI: 6.7518
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462872499genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.66.6e-091557347
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +WT +E+e + +a +q G++ +++I ++++  +   q++++++ +
        462872499 15 AWTRQEEENFFNALRQVGKN-FEKITHRVQ-SKNKDQVRHYYYRL 57
                     6*****************99.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129313.1671162IPR017884SANT domain
SMARTSM007175.1E-71260IPR001005SANT/Myb domain
SuperFamilySSF466897.48E-101261IPR009057Homeodomain-like
CDDcd001671.02E-61558No hitNo description
PfamPF002498.8E-71557IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-51560IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 718 aa     Download sequence    Send to blast
MPNAKSAPGT RQWAAWTRQE EENFFNALRQ VGKNFEKITH RVQSKNKDQV RHYYYRLVRR  60
MKKLLGPEFS LDAKDSKDTI AAMLRWWSLL EKFSCSASKL HLKPRRFKSF VEALGNQLLK  120
DRNKSRRKCT RVDMCLSSPS PVLSKASGNE PFPVKFLSED AQNGSKLVSP KGTFLKRSTE  180
MNSNKSGATK GDLSATRTVK QKRRAGGVVA SAAYKKWERA AMAGVSLVAD AAEELERSTV  240
DPGLCNVEAG TFTSSSNHLS TADGISINPV KEADPQAPAK LKLQLFPINE ATRKALEKDE  300
HNPHLELTLS SRKKISSVLE HLNRKWGNSN IASGELMLFP YCAHQEDLAT YQRWTTRDTV  360
AVADVYVSVN SPSVFRLRYG WFSLVELEAG VSEISLTHFE NCMIPEDIQI KSTSGEKACV  420
QKDSAVLSNC ATEQHPCNSK AQSTMLHLRP STSKNSEVPE QLTNVPTSQF GGQKRVQDDQ  480
GMNRAAISEG DWADTLTDIS VGYLLTEASK GANSDCVGTS IVKSALFLEN PCSYDSFDAA  540
VALHASRYQS SEQQAHTSHS TIWGGEETCD EFSFHLSAAR RKKEGSNTCA SSPLDSDNEV  600
HPLNSEGFQG FLQDLVGAEA ADNPYTDDAK DTDELCAKSS TQNGDHNELK DQSLADIYWP  660
DSLGPLDLEI PSVRYQADDL LLGDSQNSWS RMMANSLDAF RNLSFFSMDK SDSISPIV
Cis-element ? help Back to Top
SourceLink
PlantRegMap462872499
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796637.10.0TSL-kinase interacting protein 1 isoform X1
RefseqXP_025796638.10.0TSL-kinase interacting protein 1 isoform X1
TrEMBLA0A0A9QC340.0A0A0A9QC34_ARUDO; Uncharacterized protein
STRINGSi034363m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54783643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36960.20.0TSL-kinase interacting protein 1