PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462873072
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family ERF
Protein Properties Length: 318aa    MW: 34336.6 Da    PI: 4.2834
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462873072genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP244.53.7e-14124171256
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                +y+GVr++++     AeIrdp+ +g   r++lg+++ + eAa+a+++a+ +l+g+
  462873072 124 KYRGVRQRPW-----AEIRDPKRRG--SRVWLGTYDAPIEAARAYDRAAFRLRGA 171
                8********7.....8****96554..**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.2E-25123179IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-16124179IPR016177DNA-binding domain
PfamPF008474.1E-9124170IPR001471AP2/ERF domain
PROSITE profilePS5103219.282124178IPR001471AP2/ERF domain
SMARTSM003802.3E-28124184IPR001471AP2/ERF domain
CDDcd000183.46E-24124179No hitNo description
PRINTSPR003672.0E-11125136IPR001471AP2/ERF domain
PRINTSPR003672.0E-11160180IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MDFAGDADDF AALDFIRELL LGGGCSGVPD ASWVVSDEVS VPVLPLPEPE PAAFQPMPQQ  60
QHEVYIDMAL DYCTGAIPAA ALGEAAFLAQ KPAQPVMIMF ESQPSSPVTT RPLTASAPVE  120
DFRKYRGVRQ RPWAEIRDPK RRGSRVWLGT YDAPIEAARA YDRAAFRLRG AKAILNFPNE  180
VGSRGADLLA SAPAPAKQGG AAANKRKRQQ QQQQEEEDPD VVVVAVVNKA AKTDEVPSTW  240
TSTEVEDPDV EVVPVVNKAP KTREVPSTEV ACTTVADAGA DEGFPMTPSS WSWEELLDGL  300
PPMSPQPAFV DITGSLYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-20123183468ATERF1
3gcc_A3e-20123183468ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462873072
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7275254e-67KJ727525.1 Zea mays clone pUT5385 AP2-EREBP transcription factor (EREB61) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001140538.19e-82uncharacterized protein LOC100272603
TrEMBLB4FPJ92e-80B4FPJ9_MAIZE; Ethylene-responsive transcription factor ERF105
TrEMBLK4JFF82e-80K4JFF8_MAIZE; AP2-EREBP-type transcription factor (Fragment)
STRINGGRMZM5G805505_P013e-81(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.19e-31ethylene responsive element binding factor 5