PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462873374
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family TALE
Protein Properties Length: 155aa    MW: 17921.8 Da    PI: 7.7809
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462873374genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox24.83.7e-08921252154
                HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
   Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                k +yp++e++++L +++gL+ +q+ +WF N+R +
  462873374  92 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 125
                569*****************************87 PP
2ELK322.7e-114667122
        ELK  1 ELKhqLlrKYsgyLgsLkqEFs 22
               ELKh+L+++Y+++L+++++E++
  462873374 46 ELKHELKQGYREKLVDIREEIM 67
               9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF037893.8E-74667IPR005539ELK domain
SMARTSM011883.8E-44667IPR005539ELK domain
PROSITE profilePS5121310.1964666IPR005539ELK domain
PROSITE profilePS5007111.75866129IPR001356Homeobox domain
SuperFamilySSF466892.4E-1668133IPR009057Homeodomain-like
SMARTSM003893.3E-1068133IPR001356Homeobox domain
CDDcd000869.37E-1169130No hitNo description
Gene3DG3DSA:1.10.10.605.1E-2573130IPR009057Homeodomain-like
PfamPF059201.1E-1886125IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MSDDEDNQVD SESNMFEGND GSDGMGFGPL MLTEGERSLV ERVRQELKHE LKQGYREKLV  60
DIREEIMRKR RAGKLPGDTA STLKAWWQAH SKWPYPTEED KARLVQETGL QLKQINNWFI  120
NQRKRNWHSN PASSSSDKSK RKRNTAGDGN AEQSW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1122142RKRNWHSNPASSSSDKSKRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMap462873374
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004965737.11e-109homeobox protein knotted-1-like 11 isoform X1
RefseqXP_025811840.11e-109homeobox protein knotted-1-like 11 isoform X1
SwissprotQ0E3C31e-100KNOS2_ORYSJ; Homeobox protein knotted-1-like 2
TrEMBLA0A2S3HHU91e-108A0A2S3HHU9_9POAL; Uncharacterized protein
TrEMBLA0A2T7DW161e-108A0A2T7DW16_9POAL; Uncharacterized protein
TrEMBLK3XYC41e-108K3XYC4_SETIT; Uncharacterized protein
STRINGPavir.Db00648.1.p1e-109(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56438169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.23e-79KNOTTED1-like homeobox gene 3