PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462873428
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB
Protein Properties Length: 378aa    MW: 42203.7 Da    PI: 6.4103
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462873428genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding568.8e-1880126148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT+eEd +lv++v+q+G + W+ Ia+ ++ gR +kqc++rw+++l
        462873428  80 KGQWTPEEDRKLVKLVEQFGLRKWSCIAQILP-GRVGKQCRERWHNHL 126
                      799*****************************.*************97 PP
2Myb_DNA-binding52.61.1e-16134174345
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                       W+ eEd  l++a+k+ G++ W+ Ia++++ gRt++++k++w+
        462873428 134 IWSDEEDMVLIQAHKEVGNK-WAEIAKRLP-GRTENSIKNHWN 174
                      6*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129428.48775130IPR017930Myb domain
SuperFamilySSF466891.94E-3177173IPR009057Homeodomain-like
SMARTSM007171.2E-1479128IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.3E-2981134IPR009057Homeodomain-like
PfamPF139211.1E-1883140No hitNo description
CDDcd001674.05E-1583126No hitNo description
SMARTSM007172.5E-16131179IPR001005SANT/Myb domain
PROSITE profilePS5129419.544131181IPR017930Myb domain
CDDcd001671.54E-13135177No hitNo description
Gene3DG3DSA:1.10.10.602.8E-21135179IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010183Biological Processpollen tube guidance
GO:0045697Biological Processregulation of synergid differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MVTSATFNDL GYQYYSEREI KRPFVNQVGS YLPLLTPKTE VSHLIESGLG LYKAYEMNAR  60
LVPRSRKASS NSLKKANVVK GQWTPEEDRK LVKLVEQFGL RKWSCIAQIL PGRVGKQCRE  120
RWHNHLRPNI KKDIWSDEED MVLIQAHKEV GNKWAEIAKR LPGRTENSIK NHWNATKRRQ  180
FARRRSRSSK GPKSGTLLQS YIKSLGIGPI SRNVVAPVAA QPTTPPSSPA FLTAKPSAKT  240
NNGSPEHSPS SILNTQGMFS IQENGCSETR SFEELLAPIC DDFSVDMCEG LFDTSAELFQ  300
VCGMDDDVDM NSIFNHLDYA GKADNGIDME MTWDDDVLAD CVGLESGPSA QIEVAQVKEE  360
MDLIEMMATT QNNAGAED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A9e-45781812105MYB PROTO-ONCOGENE PROTEIN
1h88_C5e-447818156159MYB PROTO-ONCOGENE PROTEIN
1h89_C5e-447818156159MYB PROTO-ONCOGENE PROTEIN
1mse_C8e-45781812105C-Myb DNA-Binding Domain
1msf_C8e-45781812105C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00442DAPTransfer from AT4G18770Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap462873428
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796038.11e-177transcription factor MYB41-like
TrEMBLA0A1E5V2V30.0A0A1E5V2V3_9POAL; Transcription factor MYB98
STRINGPavir.J02497.1.p1e-176(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28063788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.12e-62myb domain protein 98