PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462873455
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family HD-ZIP
Protein Properties Length: 240aa    MW: 26697.4 Da    PI: 5.0681
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462873455genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.72.1e-1850105256
                T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 ++++ft+eq++ Le+ F+    ++  +e++eLA++lgL+ rqV +WFqN+Ra+++
  462873455  50 ERKRRFTEEQVRSLETTFHArRAKLEPKEKAELARELGLQPRQVAIWFQNKRARWR 105
                56779**************8899********************************9 PP
2HD-ZIP_I/II121.34.9e-3950143193
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  e+krr+++eqv++LE++F++++ kLep++K+elareLglqprqva+WFqn+RAR+++kqlE+dy+ L+++ydal+e+ e+L++e+ +L+++l+e
    462873455  50 ERKRRFTEEQVRSLETTFHARRaKLEPKEKAELARELGLQPRQVAIWFQNKRARWRSKQLEQDYAELRAQYDALRERVESLKHEKLALAAQLDE 143
                  69*****************9999******************************************************************99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.59E-1834109IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.7E-1940107IPR009057Homeodomain-like
PROSITE profilePS5007118.04246107IPR001356Homeobox domain
SMARTSM003891.8E-1649111IPR001356Homeobox domain
PfamPF000468.0E-1650105IPR001356Homeobox domain
CDDcd000867.38E-1655108No hitNo description
PRINTSPR000315.7E-77887IPR000047Helix-turn-helix motif
PROSITE patternPS00027082105IPR017970Homeobox, conserved site
PRINTSPR000315.7E-787103IPR000047Helix-turn-helix motif
PfamPF021835.4E-13107148IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MQRGDCPLPP LAAHQSYEEH GGSQFFHQLM MVGDHEPAGD AGSAGGGGRE RKRRFTEEQV  60
RSLETTFHAR RAKLEPKEKA ELARELGLQP RQVAIWFQNK RARWRSKQLE QDYAELRAQY  120
DALRERVESL KHEKLALAAQ LDELKGRLNE RQDQSGSCDV NGGTASEVMD DVKRNSNNNN  180
SVSSQDDAGA VAPAVATSED STAAAGYYDD HVAYGGLPDP FCATPELWDT WPLMEWNAVA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462873455
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0636851e-114AK063685.1 Oryza sativa Japonica Group cDNA clone:001-119-F01, full insert sequence.
GenBankAK2876041e-114AK287604.1 Oryza sativa Japonica Group cDNA, clone: J065054D22, full insert sequence.
GenBankEU8475151e-114EU847515.1 Oryza sativa Japonica Group clone OsHD6B homeobox leucine zipper protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001151825.13e-99homeobox-leucine zipper protein ATHB-6
SwissprotA2X7U11e-85HOX24_ORYSI; Homeobox-leucine zipper protein HOX24
TrEMBLA0A1D6HER13e-98A0A1D6HER1_MAIZE; Homeobox-leucine zipper protein ATHB-6
STRINGGRMZM2G117164_P014e-99(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40273175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.14e-33homeobox 7