PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462873678
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB_related
Protein Properties Length: 331aa    MW: 37087 Da    PI: 8.4706
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462873678genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.52.7e-125498147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r +WT+ E++++++a +++  + Wk+I + +g  +t  q++s+ qky
        462873678 54 RESWTEPEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 98
                     789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.36E-1648104IPR009057Homeodomain-like
PROSITE profilePS5129414.1849103IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.1E-652104IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-1852101IPR006447Myb domain, plants
SMARTSM007176.5E-1053101IPR001005SANT/Myb domain
PfamPF002494.9E-105498IPR001005SANT/Myb domain
CDDcd001671.33E-75699No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MVSMSTTPHP LDSSVPGVGG GGGDAKEEAR MQLRDDDEEG SRRVRKPYTI TKSRESWTEP  60
EHDKFLEALQ LFDRDWKKIE AFVGSKTVIQ IRSHAQKYFL KVQKNGTGEH LPPPRPKRKA  120
AHPYPHKASK KTPRVVLPEQ ASRIMEQGCV ASMDTSPVAT VSSANDGENG PVQYFSPRHT  180
QAMPDFARVY NFLGSIFDPE TNGHLQQLRE MDPIDAETVL LLMKNLSMNL TSPNFEEHRS  240
LLSSHGPSMD QDMGSSPTLH LPFMNGKRGN LTHKLPVGTW RMRRMYSSSC PCHATQGYGV  300
AFSSLQSESP LKLVHRFIVS SDSDDVLPLY W
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462873678
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004964289.11e-146protein REVEILLE 6 isoform X1
SwissprotQ8H0W36e-85RVE6_ARATH; Protein REVEILLE 6
TrEMBLK3XYA01e-144K3XYA0_SETIT; Uncharacterized protein
STRINGGRMZM2G135052_P011e-144(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109638111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.27e-73MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]